ID:

clust_1017_KIF18B

 Coordinate:

chr17:44926984-44927208 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-54.1 -54.0 -53.8
mature
  1. chr17:44927089-44927108 -
  2. chr17:63902559-63902578 +
star
  1. chr1:143456495-143456509 -
  2. chr1:144282115-144282129 -
  3. chr1:144684247-144684261 +
  4. chr1:219503936-219503950 -
  5. chr11:56149886-56149900 -
  6. chr12:5616029-5616043 +
  7. chr16:35637806-35637820 -
  8. chr17:44927193-44927207 -
  9. chr18:36360702-36360716 -
  10. chr2:89617486-89617500 -
  11. chr2:91691722-91691736 -
  12. chr21:37575576-37575590 -
  13. chr22:29170143-29170157 +
  14. chr5:2908189-2908203 -
  15. chr5:65917463-65917477 -
  16. chr7:152215794-152215808 -
  17. chr8:68093572-68093586 -
  18. chr9:1336185-1336199 -
  19. chrX:34561805-34561819 -
  20. chrX:121662805-121662819 -

Sense Strand Reads

CTGTCACTCAGCTGTCAGCCAGGCAGAGAGAGGAATCCACCTCTTTGTAGAAGAAACCTCAGAGGTCATCTTGTCCAACCACCCTCCCCCATGCCCGAGCTGGGGGCTGGAGGGAGGAAGTGGCTGGCCTTGCTTCCGGTTCCCTGCTGATCAGCCTCCTTCCCTGTCCTCCCTCCCCAGGGCACCTGTGCCCCTGTTCACCATGAAGGGCCCCAAGCCAACATCTTCCCTCCCTGGGACCTCTGCCTGCAAGAAGAAGCGCGTTGCGAGGTGAGGTTTGGGAGGTGTCAGCTGTCTGGGAGAAGGAGCTCGCTCTCACCAGGGC
************************************..((((((..((.......))...)))))).....(((((.........((((((.((....))))))))..((((((((((((.((..((....(((..((((.....))))...)))..))..)))).))))))))))...))))).******************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139199
placenta		 SRR139219
thymus		 SRR139216
thymus		 SRR015447
breast		 SRR139179
liver		 SRR139201
placenta		 SRR139204
spleen		 SRR139207
spleen		 SRR139211
testes		 SRR139214
thymus		 SRR330905
skin		 SRR330917
skin		 TAX577743
breast		 SRR330915
skin		 GSM450610
brain		 TAX577744
breast		 SRR342897
heart		 RoviraIPAgo2
breast		 SRR039620
liver		 SRR330921
skin		 SRR342900
heart		 SRR342901
heart
......................................................................................................................................................TCAGCCTCCTTCCCTGTCCT........................................................................................................................................................... 20 0 2 3.50 7 0 4 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................CAGCCTCCTTCCCTGT.............................................................................................................................................................. 16 0 17 2.00 34 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCAGCCTCCTTCCCTGTCCTC.......................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................AGAAACCTCAGAGGT................................................................................................................................................................................................................................................................... 15 0 20 1.55 31 0 0 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTTCACCATGAAGGGC.................................................................................................................. 16 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CACCGTGAAGGGCCCCAAG............................................................................................................ 19 1 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAACATCTTCCCTCCC........................................................................................... 16 0 4 1.00 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TCCCCCATGCCCGAGCGG............................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................CTGGAGGGAGGAAGTGGCTGGCTCGGCTT.............................................................................................................................................................................................. 29 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................TCGCTCTCACCAGGGC 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCAACATCTTCCCTCCCTGGGACCTC.................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AAACCGCAGAGGTGATCTTGT........................................................................................................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGAAGGGCCCCAAG............................................................................................................ 14 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0
.....................................................AAACCGCAGAGGCCATCTTG............................................................................................................................................................................................................................................................ 20 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................AGGTCCTATTGTCCAACGACC.................................................................................................................................................................................................................................................. 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....ACTCAGCTGTCAGC.................................................................................................................................................................................................................................................................................................................. 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................CCTTCGCTGTCCGCTCTCCCCA.................................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................GTAGAAGAAACCTC......................................................................................................................................................................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GACAGTGAGTCGACAGTCGGTCCGTCTCTCTCCTTAGGTGGAGAAACATCTTCTTTGGAGTCTCCAGTAGAACAGGTTGGTGGGAGGGGGTACGGGCTCGACCCCCGACCTCCCTCCTTCACCGACCGGAACGAAGGCCAAGGGACGACTAGTCGGAGGAAGGGACAGGAGGGAGGGGTCCCGTGGACACGGGGACAAGTGGTACTTCCCGGGGTTCGGTTGTAGAAGGGAGGGACCCTGGAGACGGACGTTCTTCTTCGCGCAACGCTCCACTCCAAACCCTCCACAGTCGACAGACCCTCTTCCTCGAGCGAGAGTGGTCCCG
********************************************************************************************************************************************..((((((..((.......))...)))))).....(((((.........((((((.((....))))))))..((((((((((((.((..((....(((..((((.....))))...)))..))..)))).))))))))))...))))).************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR139204
spleen		 SRR139183
lung		 SRR139208
testes		 SRR553573
cerebellum		 GSM450600
brain		 SRR342900
heart		 SRR342894
heart		 GSM450599
brain		 SRR330915
skin		 SRR330913
skin		 GSM450610
brain		 SRR330905
skin		 SRR040010
cervix		 GSM450605
brain		 SRR040028
cervix		 SRR330904
skin		 SRR330912
skin		 SRR363675
fibroblast		 SRR330906
skin		 SRR330921
skin		 SRR342896
heart		 SRR342897
heart		 SRR342898
heart		 SRR342899
heart		 SRR553572
frontal-cortex		 TAX577746
breast
.....................................................................................................................................................................................................................................................................GCAACGCTC....................................................... 9 0 20 17.05 341 341 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CGGAGGAAGGGACAGGAGGG........................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................TTCTTCGCGCAACGCTC....................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TTGGAGTCTCCAGTAGAACAGGT........................................................................................................................................................................................................................................................ 23 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTGGTGGGAGAGGGTATGGGCT................................................................................................................................................................................................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GTCTCCAGTAGCTCAGGTTGGTGT.................................................................................................................................................................................................................................................. 24 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TCGGAGGAAGGGACAGGA........................................................................................................................................................... 18 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................TTCTTCGCGCAATGTTCCACTA.................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CGGTTGCAGAAGGGAGG............................................................................................ 17 1 10 0.20 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CGACAGACCCTCTTCC................... 16 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TGGCGGGAGGGGGGACGGGCT................................................................................................................................................................................................................................... 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CGGAGGAAGGGAC............................................................................................................................................................... 13 0 20 0.15 3 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................GTCTCCAGTAGATCAGGTTGG..................................................................................................................................................................................................................................................... 21 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GGGGTTCGGTCGTAGAAGGGG.............................................................................................. 21 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CGGAGGAAGG.................................................................................................................................................................. 10 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CCCGACCTCCCTCCTTC............................................................................................................................................................................................................. 17 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................CAGGTTGGTGCGAGGGCG........................................................................................................................................................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTGGTGTGTGGGGGTACCGGCT................................................................................................................................................................................................................................... 22 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GGTGTGAGGGGGTACGGGCA................................................................................................................................................................................................................................... 20 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGGAACGAAGGC........................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTTCGGTTGTAG.................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CGGAGGAAGGGA................................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................GAAGGGAGGGACC........................................................................................ 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................GGTTCGGTTGTAG.................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................CCTCTTCCTCGAG.............. 13 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................CGCGCCACGCTCGACTCC................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTGGTGGGTTGGGGGACGGGCT................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................GTCTCCAGAAGAACAGGT........................................................................................................................................................................................................................................................ 18 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGACAGGTGGTACTTCC.................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................GTCTCAAGATGAACAGGTTGG..................................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GTCTCAAGTAGAACAGG......................................................................................................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................CGGAGGAAGGG................................................................................................................................................................. 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CCAAACCCTCCAC...................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................GGAGGGGGTTCGGGCTC.................................................................................................................................................................................................................................. 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGGAACGAAGGCC.......................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Generated: 04/21/2015 at 07:49 PM