ID:

emiR_55

 Coordinate:

chr12:65170583-65170815 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.2 -39.9 -39.8

Sense Strand Reads

GGGGGAGGACTCGCGATGAATGACAGGGCGGCGGCTGCCGGGAGTCTAGACAGGAGCCGAAACCTCGAAGAGGCGGCGGCCGCGGAGCAGGGAGGAGGGTGTGATCAAGTGGACTCCAGCCCCGTTCCTAGATACCGTGTTAACGCTAAGAAACTGACCCCTCTCCTGCCCCCGCCACTTACTGACATGGACTCAACCTTGGATTCGTCAACAGGCTCCCTTCTGAAAACCAATAATCATATTGGCGGTGGGGCCTTCAGTGTGGACTCCCCCAGGATTTATTCTAACAGTCTCCCTCCCAGTGCGGCGGTGGCCGCCTCTAGTTCACTCAGG
************************************************************************..(((((....((.(((((((((.((((..((((.....)).))..))))..(((.(((....(((....)))))).))).......)))).)))))))))))).(((..((((..(((.(((....))).)))))))..)))....****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total RoviraIPAgo2
breast		 SRR039622
liver		 SRR553572
frontal-cortex		 SRR342894
heart		 SRR139202
spleen		 GSM450598
brain		 SRR039611
liver		 SRR039618
liver		 SRR095854
brain		 SRR139211
testes		 SRR139214
thymus		 SRR330910
skin		 SRR342897
heart		 SRR039191
blood		 SRR342895
heart		 TAX577743
breast		 SRR039613
liver		 TAX577740
breast		 SRR342899
heart		 TAX577580
breast		 SRR040016
cervix		 SRR342900
heart		 SRR039616
liver		 SRR330907
skin		 SRR330911
skin		 SRR330913
skin		 SRR330914
skin		 SRR330919
skin		 SRR444060
skin		 TAX577589
breast
............GCGATGAATGACAGGGCGGC............................................................................................................................................................................................................................................................................................................. 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CAGATACCGTGTTAACGCTAAGAAACTGACCCCTCTCC....................................................................................................................................................................... 38 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATGGACTCAACCTTGGAT................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CAGGGAGGAGGGTGTGATCAAGTGG............................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CGGCTGCCGGGAGTCTAGACAGGAG..................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AATGACAGGGCGGCGGCTGCCG..................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GGTGGCCGCCTCTAGTTC....... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAGGCTCCCTTCTGAAAACCAATAATC............................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AGGACTCGCGATGAATGACAGGGCGGCGGCTGCC...................................................................................................................................................................................................................................................................................................... 34 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATGGACTCAACCTTGGATTCGTCAACAGGCTC................................................................................................................... 32 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AGGACTCGCGATGAATGACAGGGCGG.............................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ACCGTGTTAACGCTAAGAAACTGACCCCTCTCC....................................................................................................................................................................... 33 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TGCCGGGAGTCTAGACAGGAGCCGA................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTTGGATTCGTCAACAGGCT.................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................ATCAAGGGGACTCAAGCCCCATTCC............................................................................................................................................................................................................. 25 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GCTGCCGGGAGTCTA............................................................................................................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGACTCCAGCCCCGTTCCTAGATT....................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTGGATTCGTCAACAGGCT.................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGGATTCGTCAACAGGCT.................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GGACTCAACCTTGGATTCGTCAACAGGCTCCC................................................................................................................. 32 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AACCTTGGATTCGTCAACAGGCT.................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CCCCCGCCAC........................................................................................................................................................... 10 0 20 0.70 14 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTTGGATTCGTCAACA........................................................................................................................ 16 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TCGCGAAGAATGACTGGGCTGC............................................................................................................................................................................................................................................................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGATCAAGTGGACTC......................................................................................................................................................................................................................... 15 0 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GGAGGGAGGAGCGTGTGATCA.................................................................................................................................................................................................................................. 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................AATCACATTGGCGGTGGGTC............................................................................... 20 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GCCACTTACTGACATGGATTT........................................................................................................................................... 21 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGACCCCTCTCCT...................................................................................................................................................................... 14 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GCTAAGAAACTGAC............................................................................................................................................................................... 14 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0
...........TGCGAGGAATGACAGGACGGC............................................................................................................................................................................................................................................................................................................. 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................AGGGCGGCGGCTCGCGGGAG................................................................................................................................................................................................................................................................................................. 20 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................AGGCGGCGGCCGCGGAGCG.................................................................................................................................................................................................................................................... 19 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................AACCGTTAAGAGGCGGCGGC............................................................................................................................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................GGGCGGCGGCTGC....................................................................................................................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................CGGCGGCTGCCAAGAGTCTT............................................................................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................GCAGCGAGGAGGGTGTGGTTAA................................................................................................................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................GCCGCGGAGC..................................................................................................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TGACCCCTCTCCT...................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................GGCGGTGGGG................................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................CTCCCAGTGC............................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................CGGCGGCTGCCG..................................................................................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GCGGCCGCGGAGC..................................................................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GCGGCGGTGG.................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CCCCCTCCTGAGCGCTACTTACTGTCCCGCCGCCGACGGCCCTCAGATCTGTCCTCGGCTTTGGAGCTTCTCCGCCGCCGGCGCCTCGTCCCTCCTCCCACACTAGTTCACCTGAGGTCGGGGCAAGGATCTATGGCACAATTGCGATTCTTTGACTGGGGAGAGGACGGGGGCGGTGAATGACTGTACCTGAGTTGGAACCTAAGCAGTTGTCCGAGGGAAGACTTTTGGTTATTAGTATAACCGCCACCCCGGAAGTCACACCTGAGGGGGTCCTAAATAAGATTGTCAGAGGGAGGGTCACGCCGCCACCGGCGGAGATCAAGTGAGTCC
******************************************************************************************************************..(((((....((.(((((((((.((((..((((.....)).))..))))..(((.(((....(((....)))))).))).......)))).)))))))))))).(((..((((..(((.(((....))).)))))))..)))....************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total TAX577742
breast		 SRR330915
skin		 SRR553573
cerebellum		 SRR342896
heart		 SRR040036
cervix		 SRR330916
skin		 SRR330921
skin		 SRR330922
skin		 SRR330923
skin		 SRR342897
heart		 SRR342900
heart		 SRR444045
skin		 TAX577579
breast		 TAX577740
breast
.................................................TGCGCTCGGCTTTGGGGCTT........................................................................................................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGCGCCTCGTAGCTCCCCCCAC........................................................................................................................................................................................................................................ 22 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TCAGGCCGCCACCGGATGAGA............ 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................CGGCGGAGATCAAGTC..... 16 1 18 0.11 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CTCACGCCGCCACCAGCG................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................GGTCTGTCCTCGGCTT................................................................................................................................................................................................................................................................................ 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................ACGCCGCCAC..................... 10 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................TTCTCCGCCGCCCGCCCATCG..................................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGGTGAATGAC..................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................CCTGAAGTCGGGGCAATG............................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................TGTCCGAGGGAA............................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................AAGGCTTTTGGTTATT................................................................................................. 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................CTATGGACCTTTTCCGCCGC............................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................CGGGGGCGGTG........................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Generated: 04/21/2015 at 06:36 PM