ID:

emiR_53

 Coordinate:

chr12:47078107-47078331 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-52.4 -52.3 -52.3

Sense Strand Reads

CCAATGCACCACATAAATTTAGTGCCAGGAAAACAGCTGAGAGGCATCTACCTTCATGGAAACCCATTTGTCTGTGACTGTTCCCTGTACTCCTTGCTGGTCTTTTGGTATCGTAGGCACTTTAGCTCAGTGATGGATTTTAAGAACGATTACACCTGTCGCCTGTGGTCTGACTCCAGGCACTCGCGTCAGGTACTTCTGCTCCAGGATAGCTTTATGAATTGCTCTGACAGCATCATCAATGGTTCCTTTCGTGCGCTTGGCTTTATTCATGAGGCTCAGGTCGGGGAAAGACTGATGGTCCACTGTGACAGCAAGACAGGTA
*****************************************(((......)))..((((....)))).(((((((((.....((.......((.....))......))..)))))))))....((((.(((((((((......((((.(((..(((((.(((..(((.((((....)))))))..))).)))))..(((((...))))).......((((..((((.....)))))))).))).))))..))))).)))).)))).....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total RoviraIPAgo2
breast		 SRR139208
testes		 SRR015447
breast		 SRR139209
testes		 SRR139210
testes		 SRR139201
placenta		 SRR015448
breast		 SRR139180
liver		 SRR139188
lung		 SRR039622
liver		 SRR139211
testes		 SRR139214
thymus		 SRR191485
breast		 SRR191598
breast		 SRR553572
frontal-cortex		 SRR553576
testes		 TAX577580
breast		 TAX577588
breast		 TAX577746
breast		 SRR342899
heart		 TAX577589
breast		 SRR330921
skin		 TAX577579
breast		 TAX577738
breast		 TAX577741
breast		 SRR342894
heart		 SRR444061
skin		 GSM450609
brain		 SRR342896
heart
........................................................TGGAAACCCATTTGTCTGTGACTGTTC.................................................................................................................................................................................................................................................. 27 0 1 4.00 4 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CAGCATCATCAATGGTTCCTTTCGT...................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TGGAAACCCATTTGTCTGTGACTGTTCC................................................................................................................................................................................................................................................. 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GTGACTGTTCCCTGTACTCCTTGCTGGTCTTTTG.......................................................................................................................................................................................................................... 34 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AACCCATTTGTCTGTGACTGTT................................................................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGGTCTTTTGGTATCGTAGGCACTT........................................................................................................................................................................................................... 25 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TGTGACTGTTCCCTGTACTCCTTGCTGGTCTTTTG.......................................................................................................................................................................................................................... 35 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................AGGCATCTACCTTCA............................................................................................................................................................................................................................................................................. 15 0 9 2.00 18 0 0 0 0 0 9 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAGCTCAGTGATGGATTTTAAGAACGA................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTGCTGGTCTTTTGGTATCGTAGGC............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CAGCATCATCAATGGTT.............................................................................. 17 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GGATCGTAAGCCCTTTAGCTCA.................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GACTGTTCCCTGTACTCCTTGCTGGTCTTTTG.......................................................................................................................................................................................................................... 32 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ACCCATTTGTCTGTGACTGTT................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTTAGTGCCAGGAAA..................................................................................................................................................................................................................................................................................................... 15 0 18 1.00 18 0 0 0 0 0 0 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TCAGGTACTTCTGCT.......................................................................................................................... 15 0 6 1.00 6 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCCAGGATAGCTTTA............................................................................................................ 15 0 9 1.00 9 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AGTGATGGATTTTAAGAACGATT.............................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GGAAAGACTGATGGTCCACTGTGACAGCAAGAC..... 33 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAGCTCAGTGATGGATTT......................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGGATTTTAAGAACGATTACACCTGTC..................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTTCCCTGTACTCCTTGCTGGTCTTTTG.......................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTCTTTTGGTATCGTAGG................................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GTTCCCTGTACTCCTTGCTGGTCTTTTG.......................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ACCCATTTGTCTGTGACTGTTCCC................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TGGATTTTAAGAACGATTACACCTGT...................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGATCTGACAGCATCATCTATGGTTCCTT.......................................................................... 29 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................AGACTGATGGTCCACTGTGACCG........... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTTTGGTATCGTAGGCA.............................................................................................................................................................................................................. 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AACCCATTTGTCTGTGACTGTTCCCTGT............................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................GACTGATGGTCCACTGTGACAGCAAGA...... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATAGCTTTATGAATTGCTCTGACAGCAT......................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AATTGCTCTGACAGCATCATCA.................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GCATCTACCTTCATGG.......................................................................................................................................................................................................................................................................... 16 0 3 1.00 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTCCTTGCTGGTCTTTTGGTATCGTAGGCA.............................................................................................................................................................................................................. 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AATTGCTCTGACAGCATCATCAATGGTT.............................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TACTCCTTGCTGGTCTTTTGGTATCGT................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCGTAGGCACTTTAGCTCAGTGATGG............................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................GGCTTTATTCATGAGGCTCAGGTCGGG..................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GAATTGCTCTGACAGC........................................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................TCCTTGGTGGTCTTTTGG......................................................................................................................................................................................................................... 18 1 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
........................................................................TGCGGGTGTTCCCTGTACTCCTT...................................................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................AATCATCAATGGTTCCTT.......................................................................... 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................CTGTGACTGTTCACTGTAC........................................................................................................................................................................................................................................... 19 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GGCAATGTAGCTCAGTGACGGA............................................................................................................................................................................................ 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................GGCACTGTAGCTAAGTGATAGA............................................................................................................................................................................................ 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................GCCTCGCTGGTGTTTTGGTATC..................................................................................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................TCTTTTGGTATTGTAGGC............................................................................................................................................................................................................... 18 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................CTGTCGCCTGTGGTGTG......................................................................................................................................................... 17 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................ACCTTGCCGGTCTTTTGGT........................................................................................................................................................................................................................ 19 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CACTCGCGTCAG..................................................................................................................................... 12 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................TGACAGTTACCCGTACTCCTT...................................................................................................................................................................................................................................... 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................................................................CAGGTCGGGGA................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................................CAGGTCGGGG.................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GGTTACGTGGTGTATTTAAATCACGGTCCTTTTGTCGACTCTCCGTAGATGGAAGTACCTTTGGGTAAACAGACACTGACAAGGGACATGAGGAACGACCAGAAAACCATAGCATCCGTGAAATCGAGTCACTACCTAAAATTCTTGCTAATGTGGACAGCGGACACCAGACTGAGGTCCGTGAGCGCAGTCCATGAAGACGAGGTCCTATCGAAATACTTAACGAGACTGTCGTAGTAGTTACCAAGGAAAGCACGCGAACCGAAATAAGTACTCCGAGTCCAGCCCCTTTCTGACTACCAGGTGACACTGTCGTTCTGTCCAT
*******************************************************(((......)))..((((....)))).(((((((((.....((.......((.....))......))..)))))))))....((((.(((((((((......((((.(((..(((((.(((..(((.((((....)))))))..))).)))))..(((((...))))).......((((..((((.....)))))))).))).))))..))))).)))).)))).....***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139193
ovary		 SRR139209
testes		 SRR139215
thymus		 SRR330915
skin		 TAX577744
breast		 SRR039619
liver		 SRR342894
heart		 TAX577746
breast		 SRR342896
heart		 SRR342901
heart		 SRR342897
heart		 SRR040010
cervix		 SRR039615
liver		 SRR191629
breast		 TAX577589
breast		 TAX577743
breast		 GSM450597
brain		 SRR037876
fibroblast		 SRR330908
skin		 SRR330921
skin		 SRR342898
heart		 TAX577590
breast
..............................TTTGTCGACTCTCCGTA...................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCAGTCCATGAAGACGAGGTC...................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................GCCAAGGAGAGCATGCGAACC.............................................................. 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GCATCCGTGAAATCGA...................................................................................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGAAGACGAGGTCCTAT.................................................................................................................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TAGTTACCAAGGAGAGCA...................................................................... 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TAGTTGCCAAGGAGAGCATG.................................................................... 20 3 20 0.25 5 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................TAGTTGCCAAGGAGAGCA...................................................................... 18 2 13 0.23 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0
............................................................TTGGGTAAACAGCTGCTGACA.................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................GAAAGCACGC................................................................... 10 0 20 0.15 3 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................GCGGCTGTCTGACTACCAGGT.................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GGAAAGCACGC................................................................... 11 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCCGTGAGCG.......................................................................................................................................... 10 0 20 0.10 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGTGGACAGCGGA................................................................................................................................................................. 13 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AGGTGACACTGTC........... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................CGAGTCCAGCCC..................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ACCATAGCATCC................................................................................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GCGCAGTCCGTTAAGACG........................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................TGACACGGGACATGAGGCACT.................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GTACTCTGAGTCCAACCCTTTT................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................................CGAGTCCAGCCCC.................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CTAGCATGCGTGACATCGA...................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Generated: 04/21/2015 at 06:36 PM