ID:

emiR_29

 Coordinate:

chr10:820700-820922 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.0 -10.8 -10.8

Sense Strand Reads

TTTGAAAGGTTTCAAAGTGATAAAGACTGAATTGATGTGTACTTTGATTATGTGAGTGCAAACGTGCTCAATAATAAATTCTCCAAGTGGGAAAAAAATAACAGTCTTTCACTTTCCACTCCTCTAGGAAGAATTCCTTTGGCTACCGGAAGAAAAGGGAGGAGAAGTTTACAGTGAGTACATAAAGCATATACCTCTTCACAAGACATTTAAATCTAATTTATACCAAACCTGAGATTTAATTAAATGGATTAAGGTTAAGGCACAAGAATGAGCATTTCAAAAGACTTGTAACGTGAAATCCACTAAGTAATAACTGACAC
*****************************************************************************************************************************************(((((...)))))......((((((....((((...(((....))).)))).....))))))..........((((((((.................)))))))).....**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139211
testes		 SRR039623
liver		 SRR139183
lung		 SRR039622
liver		 SRR039625
liver		 SRR139185
lung		 SRR139205
spleen		 SRR139208
testes		 SRR139209
testes		 TAX577453
breast		 SRR039613
liver		 SRR553576
testes		 SRR039612
liver		 SRR039619
liver		 SRR039620
liver		 SRR039624
liver		 SRR040010
cervix		 SRR040028
cervix		 SRR094130
uterus		 SRR139162
brain		 SRR139171
kidney		 SRR139172
kidney		 SRR139184
lung		 SRR139190
lung		 SRR139203
spleen		 SRR191516
breast		 SRR191567
breast		 SRR191576
breast		 SRR191615
breast		 SRR342901
heart		 TAX577738
breast		 TAX577741
breast		 GSM450605
brain		 GSM450608
brain		 SRR342894
heart
........................................................................................................................................................AAAAGGGAGGAGAAGTTTAC....................................................................................................................................................... 20 0 1 5.00 5 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0
........................................................................................................................................................AAAAGGGAGGAGAAGTTTACA...................................................................................................................................................... 21 0 1 4.00 4 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGACATTTAAATCTAATTTATACCAAACC........................................................................................... 30 0 1 3.00 3 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AAGAATTCCTTTGGCTACCGGAAGA.......................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AATTCCTTTGGCTACCGGA............................................................................................................................................................................. 19 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................ATGTGTACTTTGATTA................................................................................................................................................................................................................................................................................. 16 0 3 2.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTGAGTACATAAAGCATA.................................................................................................................................... 18 0 2 2.00 4 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGGAAGAAAAGGGAGGAGAAGTTT......................................................................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................AGGCACAAGAATGAGCATTTCAAAAGACTT................................. 30 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................AAAAGACTTGTAACGTGAAAT..................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................AGGCACAAGAATGAGCATTT........................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ACAGTCTTTCACTTTCCACTCCT........................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAAGGGAGGAGAAGTTTACA...................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TACCGGAAGAAAAGGGAG.................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAAGGGAGGAGAAGTTTACAA..................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................AAAAGGGAGGAGAAGTTTACAA..................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................TTCCTTTGGCTACCG............................................................................................................................................................................... 15 0 3 1.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AATTCCTTTGGCTACCGGAAG........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......AGGTTTCAAAGTGATAAAGACTGAATTGA................................................................................................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGAAAGAAAAGGGAGGCGAAGTTT......................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACCGGAAGAAAAGGGAGG................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGGAAGAAAAGGGAGGAGAAGT........................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGGAAGAAAAGGGAGTAGAAGTTT......................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................GAGCATTTCAAAAGACTT................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GAATTCCTTTGGCTACCGGAA............................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CAGTCTTTCACTTTCCACT........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AGTGATAAAGACTGAATTGATGTGTA.......................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CCGGAAGAAAAGGGAGGAGAAGTTTAC....................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGGAAGAAAAGGGAGGAG............................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GGAAGAAAAGGGAGGAGAAGT........................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CTCCAAGTGGGAAAAAAAT................................................................................................................................................................................................................................ 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................ATGTGACTGCAATCGTGCTCA............................................................................................................................................................................................................................................................. 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................TAGTTAAATGGATTAAGGT................................................................. 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAAGGGAGGAGAAGTTTACAAG.................................................................................................................................................... 22 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTAGTGTACGGTGAGTACATA........................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................AAGGGAGGAGAAGTT.......................................................................................................................................................... 15 0 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AAACTTTCCAAAGTTTCACTATTTCTGACTTAACTACACATGAAACTAATACACTCACGTTTGCACGAGTTATTATTTAAGAGGTTCACCCTTTTTTTATTGTCAGAAAGTGAAAGGTGAGGAGATCCTTCTTAAGGAAACCGATGGCCTTCTTTTCCCTCCTCTTCAAATGTCACTCATGTATTTCGTATATGGAGAAGTGTTCTGTAAATTTAGATTAAATATGGTTTGGACTCTAAATTAATTTACCTAATTCCAATTCCGTGTTCTTACTCGTAAAGTTTTCTGAACATTGCACTTTAGGTGATTCATTATTGACTGTG
****************************************************************************(((((...)))))......((((((....((((...(((....))).)))).....))))))..........((((((((.................)))))))).....***************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139164
heart
.................................................................................................................................................................................................................................................................................................................GATTCATTATTGACT... 15 0 8 1.00 8 8

Generated: 04/21/2015 at 06:12 PM