ID:

emiR_288

 Coordinate:

chr9:126700381-126700605 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-53.5 -53.1 -53.1
mature
  1. chr11:30984225-30984239 -
  2. chr12:26124953-26124967 +
  3. chr12:132571601-132571615 +
  4. chr13:113050180-113050194 -
  5. chr15:90702119-90702133 -
  6. chr16:24256294-24256308 +
  7. chr17:76399353-76399367 -
  8. chr18:45566510-45566524 +
  9. chr20:24813109-24813123 -
  10. chr21:25613574-25613588 -
  11. chr22:37426632-37426646 +
  12. chr3:23805921-23805935 -
  13. chr3:26622074-26622088 +
  14. chr5:6448597-6448611 +
  15. chr6:20338975-20338989 +
  16. chr6:24910453-24910467 +
  17. chr7:40248883-40248897 +
  18. chr7:157910716-157910730 -
  19. chr9:126700580-126700594 +
  20. chr9:127586270-127586284 -
star

Sense Strand Reads

GGCCTGGCAGGGACAAGCCTCTTCTCCTTTGGGAAGCCCTGCAGCCTCCTAGCAAGAGGCTGATTCCCCACTCTGCCCCCATCTGAATGTCCTTTTCATGTTGCACGCAGGGAACCTCAGGAAGGAGGATTGCCTGATGCCTGCCTGGCTCCATCCTTGAGCTCTGGGCACCACCTAGGGTGAGGGAGAGCCTGCAGCTCTGGGGCTAAGTCTGCCCTGGGGGGAAAGGGCTCCACGCTCACACGCACGCGCTCGCACACACACACTCACACCTGGACGCACACGGAGGCTTGCGGACCCATACTCACAGGCACATGTGGCCTGG
****************************************************************************************************************************************.....((((((((((.......)))))..)))))....((((((((((...((((((....(((((((((.......))))))))).....))))))..(((..........)))..............))))).)))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139209
testes		 SRR139205
spleen		 RoviraIPAgo2
breast		 SRR139210
testes		 TAX577453
breast		 SRR139168
brain		 SRR139176
kidney		 SRR191411
breast		 SRR191491
breast		 TAX577742
breast		 TAX577745
breast		 TAX577746
breast		 SRR191570
breast		 SRR342894
heart		 SRR342899
heart		 TAX577579
breast		 SRR330922
skin		 SRR342897
heart
.........................................................................................................................................................................................................................................................CGCTCGCACACACAC............................................................. 15 0 20 4.00 80 0 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CATCCTTGAGCTCTGGGCACCACCTA.................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CCATCTGAATGTCCTTTTCATGTTGCA............................................................................................................................................................................................................................ 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................CGGAGGCTTGCGGACCCATACTCACA................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCATCCTTGAGCTCTGGGCACCTAT...................................................................................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......CAGGGACAAGCCTCTT.............................................................................................................................................................................................................................................................................................................. 16 0 3 1.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CCCTGGGGGGAAAGGGCT............................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................CCCCATCTGAATGTCCTTTTCATGTT............................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................CACACACTCACACCTGGACGCAT........................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................TGCGGACCCATACT.................... 14 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CATCCTTGAGCTCTGGGCAC.......................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................CGGAGGCTTGCGGACCCATACTCAC................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................TAGCAAGAGGCTGATTCCCCACTC............................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................TGCGGACCCATACTCACAGGCACATG........ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................CCTGGACGCACACGGAGGC................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CCCCCATCTGAATGTCCTTT...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGGAAAGGGCTCCACGC....................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CACGCTCTCGCACACACCCACT.......................................................... 22 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................CACCATCTGAATGTCCTTT...................................................................................................................................................................................................................................... 19 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................CACGCTCTCGCACACAACCACTC......................................................... 23 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...CTGGCAGGGACAA..................................................................................................................................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................TCCTTGAGCTCTG............................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................GCACACGGAGGC................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................CTAGCAAGAGGC......................................................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...CTGGCAGGGA........................................................................................................................................................................................................................................................................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................ACGCGCTCGCAC................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CCGGACCGTCCCTGTTCGGAGAAGAGGAAACCCTTCGGGACGTCGGAGGATCGTTCTCCGACTAAGGGGTGAGACGGGGGTAGACTTACAGGAAAAGTACAACGTGCGTCCCTTGGAGTCCTTCCTCCTAACGGACTACGGACGGACCGAGGTAGGAACTCGAGACCCGTGGTGGATCCCACTCCCTCTCGGACGTCGAGACCCCGATTCAGACGGGACCCCCCTTTCCCGAGGTGCGAGTGTGCGTGCGCGAGCGTGTGTGTGTGAGTGTGGACCTGCGTGTGCCTCCGAACGCCTGGGTATGAGTGTCCGTGTACACCGGACC
**********************************************.....((((((((((.......)))))..)))))....((((((((((...((((((....(((((((((.......))))))))).....))))))..(((..........)))..............))))).)))))...**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139166
heart		 SRR139201
placenta		 SRR040014
cervix		 SRR094132
uterus		 SRR039611
liver		 SRR040028
cervix		 SRR094131
uterus		 SRR330913
skin		 SRR037876
fibroblast		 GSM450609
brain		 GSM450608
brain		 SRR342898
heart
.........................................................................................................................................................................................................................................GTGCGAGTGTGCGTG............................................................................. 15 0 20 1.15 23 23 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................CGAGCGTGTGTGTGTGAGT........................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GCGAGCGTGTGTGGGTGAGT........................................................ 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GAGCGTGTGTGTGTGAGT........................................................ 18 0 9 0.44 4 0 0 0 1 1 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................AGCGTGTGTGTGTGAGT........................................................ 17 0 12 0.17 2 0 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................TAGGAACTCGAGACC.............................................................................................................................................................. 15 0 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................CGTGAGCGTGTGTGTGTGAGT........................................................ 21 1 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................GACGGCACCCCCCCTTCCCGCG............................................................................................ 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................CTAAGGAGTGAGACGGGG...................................................................................................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................................CGTGCGCGAG....................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/21/2015 at 09:42 PM