ID:

emiR_254

 Coordinate:

chr7:139083894-139084117 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.3 -35.3 -35.2 -35.2

Sense Strand Reads

TATGCATGTATTTTTCCCCCTTTGGTATATCTCTGCTTGCTTCAGAGATTTTTGCACACGTGAGCTTGCCTTAATGAATGTTTGGCAAATACAAGAAGGTGTTTTGACTCTGGCTGTTGTTTCTCCCTTCTGTAGATATGCAAAAGTTATAAGGGAGAGGGTCGGCAGCAGATTTGTAACCAGCAGCCACCGTGTTCAAGACTCCACATCTGTGACCACTTCACCCGAGGGAACTGTCGTTTTCCCAACTGCCTCCGGTCCCATAACCTGATGGACAGAAAGGTGCTGGCCATCATGAGGGAGCACGGGCTGAACCCCGACGTG
****************************************************************************.((..............(((.((.((((((((..(((((((((((((((((((.((((....))))........))))))))))....................)))))))))..))...)))))).))...)))))*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039623
liver		 SRR094129
uterus		 SRR094130
uterus		 SRR139180
liver		 SRR139185
lung		 SRR139202
spleen		 SRR139217
thymus		 SRR039622
liver		 SRR342897
heart		 RoviraIPAgo2
breast		 SRR015447
breast		 SRR039190
blood		 SRR039621
liver		 SRR094132
uterus		 SRR095854
brain		 SRR139183
lung		 SRR139192
ovary		 SRR139194
ovary		 SRR139204
spleen		 SRR139205
spleen		 SRR139209
testes		 SRR139214
thymus		 SRR139215
thymus		 SRR139216
thymus		 SRR342900
heart		 SRR342901
heart		 SRR553575
Kidney		 GSM450608
brain		 SRR330905
skin		 GSM450600
brain		 GSM450607
brain		 SRR342898
heart		 GSM450609
brain		 SRR330919
skin		 TAX577742
breast		 SRR330920
skin		 SRR342894
heart
..................................................................................................................................................................................ACCAGCAGCCACCGTGTTCA.............................................................................................................................. 20 0 1 3.00 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACCAGCAGCCACCGTGTTCAAGA........................................................................................................................... 23 0 1 3.00 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................CAAGAAGGTGTTTTGACT....................................................................................................................................................................................................................... 18 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGCAGATTTGTAACCAGCAG.......................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CATAACCTGATGGACAGAAAGGTGCT..................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACCAGCAGCCACCGTGTTCAAG............................................................................................................................ 22 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GTCGGCAGCAGATTT..................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CCTGATGGACAGAAAGGTGCTGGCCATCATGAGGGAGC.................... 38 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TTTTCCCAACTGCCTCCGGTCCCATAACC........................................................ 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................ACACGTGAGCTTGCCTTAATGAAT..................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TGGACAGAAAGGTGCTGGCCAT............................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAGAGGGTCGGCAGCAGATTTG.................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAAGGGAGAGGGTCGGCAGG........................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................GATGGACAGAAAGGTGCTGGC.................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CCACTTCACCCGAGGGAACTGT....................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CATAACCTGATGGACAGAAAGG......................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................GAGGGAGCACGGGCTGAACCCCGACGT. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACCAGCAGCCACCGTGTT................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CCAGCAGCCACCGTGTTC............................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAAGGGAGAGGGTCGGCAG............................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CATCTGTGACCACTTCACCCGAG............................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GCAGATTTGTAACCAGCAGCCACCGTG.................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACTCCACATCTGTGACCACTTCACC................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TGGACAGAAAGGTGCTGGCCATCA............................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................CTGGCCATCATGAGGGAGCACG................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GAGCACGGGCTGAACCC....... 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGAGGGTCGGCAGCAGACTTGTAC................................................................................................................................................. 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................AACCTGATGGACAGAAAGGTGCT..................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACCACTTCACCCGAGGGA............................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TGAGGGAGCACGGGCTGAACC........ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGAATGTTTGGCAAATACA....................................................................................................................................................................................................................................... 19 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AGATGGTGTTGTGAATCTGGCTG................................................................................................................................................................................................................ 23 3 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AGCACGGGCTGAAC......... 14 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................CATGCTTCAGAGATTTTTG.............................................................................................................................................................................................................................................................................. 19 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGAGGGTCGGC.............................................................................................................................................................. 11 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................GGAGCACGGGCTGA........... 14 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................AGAAGGTGTTGTGAATCTGG................................................................................................................................................................................................................... 20 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TGAAGTAGCACGAGCTGAACC........ 21 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCCACCTCTGTGACCACT........................................................................................................ 18 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................GTTTTGACTCTGGC.................................................................................................................................................................................................................. 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................................CACGGGCTGAACC........ 13 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GGTATATCTCTG................................................................................................................................................................................................................................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATACGTACATAAAAAGGGGGAAACCATATAGAGACGAACGAAGTCTCTAAAAACGTGTGCACTCGAACGGAATTACTTACAAACCGTTTATGTTCTTCCACAAAACTGAGACCGACAACAAAGAGGGAAGACATCTATACGTTTTCAATATTCCCTCTCCCAGCCGTCGTCTAAACATTGGTCGTCGGTGGCACAAGTTCTGAGGTGTAGACACTGGTGAAGTGGGCTCCCTTGACAGCAAAAGGGTTGACGGAGGCCAGGGTATTGGACTACCTGTCTTTCCACGACCGGTAGTACTCCCTCGTGCCCGACTTGGGGCTGCAC
***************************************************************************************************************.((..............(((.((.((((((((..(((((((((((((((((((.((((....))))........))))))))))....................)))))))))..))...)))))).))...)))))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139201
placenta		 SRR330919
skin		 SRR330915
skin		 SRR342901
heart		 SRR342894
heart		 GSM450610
brain		 SRR094131
uterus		 SRR330923
skin		 GSM450605
brain		 SRR330905
skin		 SRR342900
heart
...................................................................................................................................................................CCGTCGTCTAAACAT.................................................................................................................................................. 15 0 7 1.00 7 7 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TGGGGCTGCAC 11 0 20 0.35 7 0 5 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TGGGGCTGCA. 10 0 20 0.20 4 0 0 0 2 0 0 0 2 0 0 0
................................................................................................................CGGCAACAAAGAGGGGAAACAT.............................................................................................................................................................................................. 22 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................ACAATGCTGAAGTGGGCT................................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TGTAGACACTGGGGAAGTGCGA................................................................................................. 22 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................GGCACAAGTTCTG.......................................................................................................................... 13 0 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................GACCGGTAGTA............................ 11 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GTCGTCGGTGGC.................................................................................................................................... 12 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GCCCGACTTGG........ 11 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................CGACCGGTAGTACT.......................... 14 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................CAGCCGTCGTCT........................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................TATGTTCTTCCA................................................................................................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/21/2015 at 08:59 PM