ID:

emiR_228

 Coordinate:

chr6:82365792-82366016 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.0 -38.7 -38.7 -38.7
mature
star
  1. chr10:26754391-26754405 +
  2. chr10:77249568-77249582 +
  3. chr12:12860896-12860910 +
  4. chr12:40808331-40808345 -
  5. chr16:80149277-80149291 +
  6. chr19:52788898-52788912 -
  7. chr2:63873187-63873201 +
  8. chr6:82365817-82365831 +
  9. chr7:77237823-77237837 -
  10. chr8:40505090-40505104 +
  11. chr9:71613609-71613623 +

Sense Strand Reads

GAAAGCCTCCACCTGGAGGACAATGCCCTCAAGGTCCTTCACAATGGCACCCTGGCTGAGTTGCAAGGTCTACCCCACATTAGGGTTTTCCTGGACAACAATCCCTGGGTCTGCGACTGCCACATGGCAGACATGGTGACCTGGCTCAAGGAAACAGAGGTAGTGCAGGGCAAAGACCGGCTCACCTGTGCATATCCGGAAAAAATGAGGAATCGGGTCCTCTTGGAACTCAACAGTGCTGACCTGGACTGTGACCCGATTCTTCCCCCATCCCTGCAAACCTCTTATGTCTTCCTGGGTATTGTTTTAGCCCTGATAGGCGCTA
************************************************************..((...(((..(((..(((((....((((((.((.........(((((((..((.(((((....)))))...))..))))))).)).))))))......)))))..)))....)))..)).*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total RoviraIPAgo2
breast		 SRR015448
breast		 SRR139208
testes		 SRR015447
breast		 SRR139201
placenta		 SRR139210
testes		 TAX577453
breast		 TAX577738
breast		 GSM450602
brain		 SRR039620
liver		 SRR040028
cervix		 SRR095854
brain		 SRR139168
brain		 SRR139175
kidney		 SRR139177
liver		 SRR139178
liver		 SRR139182
liver		 SRR139190
lung		 SRR139211
testes		 SRR139214
thymus		 SRR191552
breast		 SRR342894
heart		 SRR342900
heart		 SRR553572
frontal-cortex		 SRR553576
testes		 TAX577590
breast		 TAX577580
breast		 SRR037876
fibroblast		 SRR039618
liver		 SRR342899
heart		 SRR342897
heart		 SRR039623
liver		 SRR330908
skin		 SRR342896
heart
...................................................................................................................................CATGGTGACCTGGCTCAAGGAAACAGAGGTAGTGCA.............................................................................................................................................................. 36 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ACAATGCCCTCAAGGTCCTTCACAAT........................................................................................................................................................................................................................................................................................ 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TGGCTCAAGGAAACAGAGGTAG.................................................................................................................................................................. 22 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CACATTAGGGTTTTC........................................................................................................................................................................................................................................... 15 0 11 2.00 22 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................GGACTGTGACCCGATTCTTCCCCCATCC.................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GAAACAGAGGTAGTGCAGGGCAAAGA..................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GAAACAGAGGTAGTGCA.............................................................................................................................................................. 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AAACAGAGGTAGTGCAGGGCAA........................................................................................................................................................ 22 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CCCGATTCTTCCCCCATCCCTGCAAACC........................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GAACTCAACAGTGCTGACC................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................ACTGTGACCCGATTCT.............................................................. 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AAACAGAGGTAGTGCCGGGCAA........................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TGGCTCAAGGAAACAGAGGTAGTGCA.............................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TGGCTCAAGGAAACAG........................................................................................................................................................................ 16 0 7 1.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GGCAGACATGGTGAC......................................................................................................................................................................................... 15 0 7 1.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................ATCCCTGCAAACCTCT........................................ 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CCCGGAAAAAATGAGGAATCGGG............................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAGACCGGCTCACCTGTG....................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TCCTGGGTATTGTTTTAGC.............. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGAAACAGAGGTAGTGCAGGGCAAAGA..................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ACATGGTGACCTGGCTCAA................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTCTTGGAACTCAACAGTGCTGACCTG............................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CCGGCTCACCTGTGCATA................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACATTAGGGTTTTCC.......................................................................................................................................................................................................................................... 15 0 7 1.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............GGAGGACAATGCCCTCAAGGT.................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GAGGAATCGGGTCCTCTTGGAACTC.............................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCTTATGTCTTCCTGGG.......................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TAGTGCAGGGCAAAG...................................................................................................................................................... 15 0 7 1.00 7 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AAGGAAACAGAGGTAGTGCAGGGCAA........................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACCTGGCTCAAGGAAACAGAGGTAGTGCAGG............................................................................................................................................................ 31 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTGGAACTCAACAGTGCTGACCTGGAC............................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTCTTGGAACTCAACAGTGCTGACCTGG.............................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AAACAGAGGTAGTGCAGGGCA......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GCAAACCTCTTATGTCTTCCTGGGTATTGTTTTAG............... 35 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GTAATGACCGGCTCCCCTGTGC...................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GAGGTATCGGGTCCTCT...................................................................................................... 17 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................CGGAAAAAAATGAGGAATCGG............................................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GAGGTAGTACAGGGCATAGA..................................................................................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................ATGGAACCCCGGCCGAGTTGC..................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................TACCCCACATTAGG................................................................................................................................................................................................................................................. 14 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................ACACCGGTACCCTGGCTGAGT........................................................................................................................................................................................................................................................................ 21 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AGCCCTGATCGGCGC.. 15 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................GTCTGCGACTGC............................................................................................................................................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................TGTGCTGTGACCCGATTTTTC............................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................CCTGTTCATATCCGG.............................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CTTTCGGAGGTGGACCTCCTGTTACGGGAGTTCCAGGAAGTGTTACCGTGGGACCGACTCAACGTTCCAGATGGGGTGTAATCCCAAAAGGACCTGTTGTTAGGGACCCAGACGCTGACGGTGTACCGTCTGTACCACTGGACCGAGTTCCTTTGTCTCCATCACGTCCCGTTTCTGGCCGAGTGGACACGTATAGGCCTTTTTTACTCCTTAGCCCAGGAGAACCTTGAGTTGTCACGACTGGACCTGACACTGGGCTAAGAAGGGGGTAGGGACGTTTGGAGAATACAGAAGGACCCATAACAAAATCGGGACTATCCGCGAT
***********************************************************************************************************************************************..((...(((..(((..(((((....((((((.((.........(((((((..((.(((((....)))))...))..))))))).)).))))))......)))))..)))....)))..)).************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR139168
brain		 SRR139176
kidney		 SRR139190
lung		 SRR139219
thymus		 SRR139183
lung		 SRR139188
lung		 SRR139205
spleen		 SRR139209
testes		 SRR342894
heart		 SRR342901
heart		 SRR040024
cervix		 SRR342897
heart
...................................................................CAGATGGGGTGTAAT................................................................................................................................................................................................................................................... 15 0 3 11.00 33 12 9 6 6 0 0 0 0 0 0 0 0
...................................................................CAGATGGGGTGTAATC.................................................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................GGGGTGTAATCCCAAA............................................................................................................................................................................................................................................. 16 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCCTTAGCCCAGGAGAAC.................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................AAATCGGGACTATCCGCGAT 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................ATCGGGACTATCCGCGAT 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................GACCGACTCAACGTTCC................................................................................................................................................................................................................................................................. 17 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCCCAGGAGAAC.................................................................................................... 12 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0 0 0
..................................................................CCAGATGGGGTGTA..................................................................................................................................................................................................................................................... 14 0 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................TGTCTTGCCGCGTGGACACGT..................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................CAGATGGGGTGTA..................................................................................................................................................................................................................................................... 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/21/2015 at 08:59 PM