ID:

emiR_202

 Coordinate:

chr5:1462237-1462459 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.8 -24.6 -24.5
mature
  1. chr1:168530509-168530518 +
  2. chr10:58961564-58961573 +
  3. chr11:35327923-35327932 +
  4. chr12:46547179-46547188 +
  5. chr13:52300413-52300422 +
  6. chr13:78101025-78101034 +
  7. chr15:76207584-76207593 +
  8. chr18:660962-660971 +
  9. chr18:33552144-33552153 +
  10. chr19:11660185-11660194 +
  11. chr19:51226577-51226586 +
  12. chr2:73346498-73346507 +
  13. chr2:202873454-202873463 +
  14. chr21:45244155-45244164 +
  15. chr3:40960729-40960738 +
  16. chr3:176965241-176965250 +
  17. chr4:90955761-90955770 +
  18. chr5:158903283-158903292 +
  19. chr6:151015050-151015059 +
  20. chrX:35200967-35200976 +
  21. chr11:34699567-34699576 +
  22. chr11:38212512-38212521 +
  23. chr11:128084332-128084341 +
  24. chr12:94431929-94431938 +
  25. chr18:24336918-24336927 +
  26. chr2:40914304-40914313 +
  27. chr2:194084876-194084885 +
  28. chr20:15262007-15262016 +
  29. chr21:19416540-19416549 +
  30. chr3:39198927-39198936 +
  31. chr4:10394307-10394316 +
  32. chr4:47527239-47527248 +
  33. chr4:126609638-126609647 +
  34. chr4:134039800-134039809 +
  35. chr5:170352245-170352254 +
  36. chr6:109711744-109711753 +
  37. chr6:128392919-128392928 +
  38. chr8:52521385-52521394 +
  39. chr6_KI270801v1_alt:742253-742262 +
  40. chrX:26978436-26978445 +
  41. chr10:11817829-11817838 +
  42. chr10:83881647-83881656 +
  43. chr11:28106602-28106611 +
  44. chr11:95773821-95773830 +
  45. chr13:36934565-36934574 +
  46. chr13:45296556-45296565 +
  47. chr2:130600202-130600211 +
  48. chr20:12142520-12142529 +
  49. chr3:44847122-44847131 +
  50. chr4:26726858-26726867 +
  51. chr5:23656336-23656345 +
  52. chr6:93519384-93519393 +
  53. chr7:7230655-7230664 +
  54. chr8:68600719-68600728 +
  55. chr8:121841745-121841754 +
  56. chr9:119441253-119441262 +
  57. chr3_KI270777v1_alt:58592-58601 +
  58. chr21_KI270874v1_alt:90204-90213 +
  59. chrX:39080108-39080117 +
  60. chrX:138289720-138289729 +
  61. chr1:104058024-104058033 -
  62. chr10:103072308-103072317 -
  63. chr11:39810935-39810944 -
  64. chr11:108363637-108363646 -
  65. chr12:45913864-45913873 -
  66. chr12:79217730-79217739 -
  67. chr12:85264887-85264896 -
  68. chr17:74404717-74404726 -
  69. chr2:36089371-36089380 -
  70. chr2:196252852-196252861 -
  71. chr3:21037634-21037643 -
  72. chr3:21872007-21872016 -
  73. chr4:53514967-53514976 -
  74. chr5:1462365-1462374 -
  75. chr5:59843782-59843791 -
  76. chr5:114320920-114320929 -
  77. chr6:3534351-3534360 -
  78. chr7:20694408-20694417 -
  79. chr8:30794021-30794030 -
  80. chr9:61681463-61681472 -
star
  1. chr5:1462275-1462292 -
  2. chr5_KI270791v1_alt:47481-47498 +

Sense Strand Reads

CTGGTGACAGCCGTGCGGACACCACTCCTCTCTGCAGCACTGCCTCCCAGCGCCAGGGTCGCGGGCACATCCCACTGAGAGCGGGGGTCCTGCCCCATCTTAGAGTCAAAGGCAGAGGGGCTTCCAGGCCCTGGATGGGGTATTTTGGTGTCACCTGAAGTCCCTCTGACATCACCTTGTTTCATCATTTTTTATGACAGAATTAGAAACCCATCCTTCAAGCACAATAATCATCACAGACTTGAGTTTGCTTCCTAAAGCAAAGGCTCCGGGTTTGTTTGGAAAATTTTTTTGATTTCTGAAATGAATTGATTTTTATATTT
************************************************************************************************************************.......((...(((((((......((((((((...((......)))))))))).((.((((..((((.....))))..)))).))...))))))).....)).............(((((....)))))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139180
liver		 SRR139183
lung		 SRR139170
heart		 TAX577743
breast		 SRR139186
lung		 SRR139214
thymus		 SRR139217
thymus		 TAX577745
breast		 SRR039622
liver		 TAX577589
breast		 RoviraIPAgo2
breast		 TAX577588
breast		 SRR139174
kidney		 SRR139185
lung		 SRR139187
lung		 SRR139189
lung		 SRR139203
spleen		 SRR139204
spleen		 SRR139216
thymus		 SRR553572
frontal-cortex		 SRR342900
heart		 SRR191589
breast		 TAX577742
breast		 TAX577744
breast		 SRR037876
fibroblast		 GSM450605
brain		 SRR330905
skin		 SRR330914
skin		 TAX577740
breast		 TAX577746
breast		 GSM450601
brain		 SRR040010
cervix		 SRR191394
breast		 SRR191488
breast		 SRR191615
breast		 SRR553573
cerebellum		 SRR191585
breast		 SRR330916
skin		 SRR191552
breast		 TAX577453
breast		 SRR342901
heart		 TAX577580
breast		 TAX577590
breast		 TAX577738
breast		 SRR015448
breast		 SRR191401
breast		 SRR191560
breast		 SRR330915
skin		 SRR330922
skin		 SRR363675
fibroblast		 SRR444060
skin		 SRR330907
skin		 SRR191550
breast		 SRR094131
uterus		 SRR330913
skin		 SRR330923
skin
.......................................................................................................................................TGGGGTATTT.................................................................................................................................................................................. 10 0 20 423.95 8479 8479 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TCAAGCACAATAATCATC........................................................................................ 18 0 2 3.00 6 0 4 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCACCTGAAGTCCCTCTGACAT....................................................................................................................................................... 22 0 2 2.00 4 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GGTGTCACCTGAAGTCCCTCTGAC......................................................................................................................................................... 24 0 2 2.00 4 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGGGGTATTTTGGTG............................................................................................................................................................................. 15 0 9 2.00 18 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CACCTGAAGTCCCTCTGACAT....................................................................................................................................................... 21 0 2 2.00 4 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AATCAAAGGCTCCGGGT................................................. 17 1 8 1.50 12 0 0 0 2 0 0 0 2 0 6 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AAATCAAAGGTTCCGGGT................................................. 18 2 20 1.45 29 0 0 0 0 0 0 0 7 0 9 0 6 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGACATCACCTTGTTT............................................................................................................................................. 16 0 10 1.00 10 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CATCATTTTTTATGACAGAA......................................................................................................................... 20 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACCTGAAGTCCCTCTGACAT....................................................................................................................................................... 20 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CATCCTTCAAGCACAATAATCATCACA..................................................................................... 27 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TCAAAGGCTCCGGGTTCGTTT........................................... 21 2 2 1.00 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCACCTGAAGTCCCT.............................................................................................................................................................. 15 0 11 1.00 11 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACCCATCCTTCAAGCACAATAATC........................................................................................... 24 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AATTAGAAACCCATCCTTCA....................................................................................................... 20 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATGGGGTATTTTGGTGT............................................................................................................................................................................ 17 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCACCTGAAGTCCCTCTGACATC...................................................................................................................................................... 23 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CTAATTCAAAGGTTCCGGGTTT............................................... 22 3 9 0.89 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CTAATTCAAAGGCTCCGGGT................................................. 20 2 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CTAATTCAAAGGCTCCGGGTT................................................ 21 2 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TAATTCAAAGGCTCCGGGT................................................. 19 2 9 0.56 5 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AAGCAAAGGCTCCGGGTTTGTTTGGA........................................ 26 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CATCTTAGAGTCAAAGGCAG................................................................................................................................................................................................................ 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AAAGGCAGAGGGGCTTCCAGGC.................................................................................................................................................................................................. 22 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CCTGAAGTCCCTCTGACA........................................................................................................................................................ 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGAAGTCCCTCTGACATCACCTTGTTT............................................................................................................................................. 27 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GTATTTTTTTGTCACCTGAAGTCCCTC............................................................................................................................................................. 27 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GCCAGGGTCGCGGGCACATCCCACTGAGAGCGG............................................................................................................................................................................................................................................... 33 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................AGCGCCAGGGTCGCGGGCACATCCCACTGAGAGC................................................................................................................................................................................................................................................. 34 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTATGACAGAATTAGAAACCCATCCTTCA....................................................................................................... 29 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TCAAAGGTTCCGGGTTTGTTT........................................... 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGATGGGGTATTTTGGTTTCA.......................................................................................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AAGGCAGAGGGGCTTCCAGGCC................................................................................................................................................................................................. 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GTGACAGCCGTGCGGACACCACT......................................................................................................................................................................................................................................................................................................... 23 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AAAGGCTCCGGGTTTGTTTGG......................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CCAGCGTCAGGGTCGTGGGCAC............................................................................................................................................................................................................................................................... 22 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................GCACATCCCACTGAGAGCG................................................................................................................................................................................................................................................ 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AAAGGTTCCGGGTTTGT............................................. 17 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TAAAGCAAAGGCTCCGGG.................................................. 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CTAATTCAAAGGCTCCGGGTTT............................................... 22 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AATTTTTTTGATTTCTGAAATG................. 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AAATTTTTTTGATTTCTTAAATG................. 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AAGGCAGAGGGGCTTCCAGGC.................................................................................................................................................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................AAGCAAAGGTTCCGGGT................................................. 17 1 13 0.46 6 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ACCAAAGGCTCCGGGTTCGATT........................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ACCAAAGGCTCCGGGTTCGTT............................................ 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AAATCAAAGGCTCCGGGT................................................. 18 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TAATTCAAAGGCTCCGGGTT................................................ 20 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TCCTAATTCAAAGGTTCCGGGTT................................................ 23 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................TTTCTAAATCAAAGGTTCCGGGTT................................................ 24 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TGCAAAGGTTCCGGGTTTGGTT........................................... 22 3 8 0.25 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ATCAAAGGCTCCGGGTTGGTT............................................ 21 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGGCCCTGGATGGGGT...................................................................................................................................................................................... 16 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................AGCAAAGGTTCCGGGTT................................................ 17 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TCCTAATTCAAAGGTTCCGGGT................................................. 22 3 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
..........................................TCCCCCAGCGCCAGGGTCGCG.................................................................................................................................................................................................................................................................... 21 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AATTCAAAGGCTCCGGGT................................................. 18 2 20 0.15 3 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGGGGTATTGTGGTGTC........................................................................................................................................................................... 17 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TCGCCAGGGTCGCGGGC................................................................................................................................................................................................................................................................. 17 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TAAATCAAAGGTTCCGGGT................................................. 19 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGCGGTATTCTGGTGTCACGT....................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TAATGCAAAGGATCCGGGT................................................. 19 2 15 0.13 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TAATTCAAAGGTTCCGGGTTTG.............................................. 22 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TGCAAAGGTTCCGGGTTTGTCT........................................... 22 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CATTTTTTATGACAG........................................................................................................................... 15 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AAAGGTTCCGGGTTTGTG............................................ 18 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................................................TTCAAAGGTTCCGGGTTTGTTT........................................... 22 3 20 0.10 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ATCAAAGGTTCCGGGTTTGTC............................................ 21 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TAAGGCAAAGGTTCCGGGT................................................. 19 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ATCAAAGGTTCCGGGTTCGTT............................................ 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TGCAAAGGTTCCGGGTTTGTGT........................................... 22 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TAATGCAAAGGTTCCGGGT................................................. 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GAGCGGGGGTCCTG....................................................................................................................................................................................................................................... 14 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................TTCTAATTCAAAGGCTCCGGGT................................................. 22 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................ATCGAAGGTTCCGGGTTTGTTT........................................... 22 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TCAAAGGCTCCGGGTTCGGTT........................................... 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TAACGCCAAGGTCGCGGGCACA.............................................................................................................................................................................................................................................................. 22 3 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TCAAAGGGTCCGGGTTTGT............................................. 19 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CAAAGGTTCCGGGTTCGTT............................................ 19 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................CCTAAAGCAAAGGC........................................................ 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................AAAGGTTCCGGGTTTCTTT........................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CAAAGGTTCCGGGTTTGG............................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................GAAATCAAAGGCTCCGGGT................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CCATGCGGCCACCACTCCTCAC................................................................................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AACTCAAAGGCTCCGGGT................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................AGGGTCGCGGG.................................................................................................................................................................................................................................................................. 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................TTGCAAAGGCTCCGGGT................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CCAGGCCGTGGGTGGGGTA..................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CAGGGTCGCGGG.................................................................................................................................................................................................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GACCACTGTCGGCACGCCTGTGGTGAGGAGAGACGTCGTGACGGAGGGTCGCGGTCCCAGCGCCCGTGTAGGGTGACTCTCGCCCCCAGGACGGGGTAGAATCTCAGTTTCCGTCTCCCCGAAGGTCCGGGACCTACCCCATAAAACCACAGTGGACTTCAGGGAGACTGTAGTGGAACAAAGTAGTAAAAAATACTGTCTTAATCTTTGGGTAGGAAGTTCGTGTTATTAGTAGTGTCTGAACTCAAACGAAGGATTTCGTTTCCGAGGCCCAAACAAACCTTTTAAAAAAACTAAAGACTTTACTTAACTAAAAATATAAA
*************************************************************************.......((...(((((((......((((((((...((......)))))))))).((.((((..((((.....))))..)))).))...))))))).....)).............(((((....)))))************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR139218
thymus		 SRR139185
lung		 SRR139199
placenta		 SRR139214
thymus		 SRR139216
thymus		 SRR191415
breast		 SRR342898
heart		 TAX577744
breast		 SRR342894
heart		 SRR444048
skin		 SRR039190
blood		 SRR444060
skin		 GSM450600
brain		 SRR330905
skin		 SRR330908
skin		 SRR330913
skin		 SRR330922
skin		 SRR342897
heart		 SRR342899
heart
....................................................................................................................................................................................................................................................................................CAAACCTTTTAAAAA................................ 15 0 20 4.50 90 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GGAGAGACGTCGTGACG........................................................................................................................................................................................................................................................................................ 17 0 2 2.00 4 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GAGAGACGTCGTGACGG....................................................................................................................................................................................................................................................................................... 17 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GAGACTGTAGTGGAA................................................................................................................................................. 15 0 17 1.00 17 0 0 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CACTGTCGGCACGCCTG............................................................................................................................................................................................................................................................................................................... 17 0 3 0.67 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.ACCACTGTCGCCACGCTTG............................................................................................................................................................................................................................................................................................................... 19 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GACTTCAGGGAGACT.......................................................................................................................................................... 15 0 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................TCGTGACGGAGGGTC................................................................................................................................................................................................................................................................................. 15 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................GCTTCCGAGGCTCAAGCAAAC.......................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.ACCACTGTCGCCACGC.................................................................................................................................................................................................................................................................................................................. 16 1 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................GCCCCCAGGACG...................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........TCGGCACGCC................................................................................................................................................................................................................................................................................................................. 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................AGGTCCGGGACCT............................................................................................................................................................................................ 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................GAGGCGTCGTGTCGGAGGGT.................................................................................................................................................................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................CGGTCCCAGC...................................................................................................................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............CACGCCTGTGG............................................................................................................................................................................................................................................................................................................ 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................AGTAGTGTCTGA................................................................................. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Generated: 04/21/2015 at 09:07 PM