ID:

emiR_181

 Coordinate:

chr3:27374715-27374941 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.0 -39.6 -39.5
mature
star
  1. chr11:29462886-29462901 +
  2. chr3:27374717-27374732 -
  3. chr7:137084059-137084074 +

Sense Strand Reads

CTGCCTAAAAAGAGTTAGACTCTATTGGCAATTGATAGAGTATTACCCACGGTGCTTATTATTGTTTATGAGCTTCCATTGTAATGATTCCTTTTTATTTGTAGCAGCATAATTATTTCCAAAGACCCCAGTATTTGCTGCTATTTTTAAAACTCCCCTGATGTACCTGAACAAGAGGATTTCCTCACATCATTTCCTTGTGTCTGGACATCAGGGGTAACAACTGTACTTACTTTACAGGAAGAAATTTTAAAACTGAAAACTACCTGGGATCATAGTGTTTCTGTGATTTTATTTAATTGTGTATAGTAATTATCCAGTGCCAGA
*********************************************************************************************************************************************.............((((((((((.((.((.((.(((((...............))))).)))).))))))))))))....................((((.((...(((((....))))).)).))))..(((((((.....)))))))************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039624
liver		 SRR039622
liver		 SRR039620
liver		 SRR039615
liver		 SRR139206
spleen		 SRR330911
skin		 SRR342897
heart		 SRR342899
heart		 SRR139218
thymus		 TAX577746
breast		 GSM450600
brain		 GSM450605
brain		 GSM450607
brain		 GSM450609
brain		 RoviraIPAgo2
breast		 SRR015447
breast		 SRR039617
liver		 SRR039625
liver		 SRR040014
cervix		 SRR139172
kidney		 SRR139179
liver		 SRR139183
lung		 SRR139185
lung		 SRR139188
lung		 SRR139195
ovary		 SRR139200
placenta		 SRR139201
placenta		 SRR139202
spleen		 SRR139207
spleen		 SRR139208
testes		 SRR139214
thymus		 SRR191410
breast		 SRR191548
breast		 SRR191618
breast		 SRR330922
skin		 SRR342901
heart		 SRR553574
heart		 TAX577745
breast		 TAX577589
breast		 SRR094131
uterus		 TAX577744
breast
............................................................................................................................................................CCTGATGTACCTGAACAAGAGGA.................................................................................................................................................... 23 0 1 6.00 6 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CCCCTGATGTACCTGAACAAGAGGA.................................................................................................................................................... 25 0 1 5.00 5 1 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................AAACTACCTGGGATCA.................................................... 16 0 3 4.00 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 3 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TAATTATTTCCAAAG........................................................................................................................................................................................................... 15 0 20 2.00 40 0 0 0 0 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACTCCCCTGATGTACCTGAACA.......................................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................AACTCCCCTGATGTACCTGAACAAGA....................................................................................................................................................... 26 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CTTATTATTGTTTAT.................................................................................................................................................................................................................................................................. 15 0 20 1.25 25 0 0 0 0 0 0 0 0 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTGTGTCTGGACATCAGG................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................TAGCAGCATAATTAT................................................................................................................................................................................................................... 15 0 13 1.00 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AATTGATAGAGTATTACCCACG.................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTGTGTCTGGACATCAGGGGTA............................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCCCCTGATGTACCGGAACAAGAGGA.................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TAAAACTGAAAACTACCTGG......................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGGACATCAGGGGTAACAACT...................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CTGATGTACCTGAACAAGAGGA.................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................CCCTGATGTACCTGAACAAGAGGA.................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GATGTACCTGAACAAGAGGATTTC................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TTGATAGAGTATTACC........................................................................................................................................................................................................................................................................................ 16 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................ACAGGAAGAAATTTTAAAACTG..................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTCCCCTGATGTACCTGAACAAGAGGA.................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................ATTTTAAAACTGAAAACTACC............................................................ 21 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................ACTGAAAACTACCTGGGATCAT................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CCTGATGTACCTGAACAAGAAGA.................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTGTGTCTGGACATCAGGGGTAAAA......................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTGTGTCTGGACATCAGGGGTATA.......................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AAACTGAAAACTACCTGGGATCATA.................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCCCCTGATGTACCTGAACAAGAG...................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................CTCACATCATTTCCTTGTGTCTGGACATC................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TAGCAGCATAATTATT.................................................................................................................................................................................................................. 16 0 8 1.00 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CCCCTGATGTACCTGAACAAGAGGATTT................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AACTCCCCTGATGTACCTGAA............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AGAGTTAGACTCTATTGGCAA........................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TCATTTCCTTGTGTCTGGACATCAGGG............................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTTTACAGGAAGAAATTTTA........................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTGTGTCTGGACATCAGGGGTAAT.......................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AACTCCCCTGATGTACCTGAACAAGAGGA.................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GCTATTTTTAAAACTCC........................................................................................................................................................................... 17 0 3 1.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................ACCTGAACAAGAGGATTTC................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGTTAGACTCTATTGGC.......................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................CTCCCCTGATGTACCTGAACAAGAGG..................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTGTCTGGACATTAGGGGTAT........................................................................................................... 22 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................TAGCAGCATAACTATTTCCG.............................................................................................................................................................................................................. 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTTATTTGTAGGAGCATA........................................................................................................................................................................................................................ 18 1 18 0.11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0
.....................................................................................................................TCCAAAGAACCCAGGATTCGCT............................................................................................................................................................................................ 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GACGGATTTTTCTCAATCTGAGATAACCGTTAACTATCTCATAATGGGTGCCACGAATAATAACAAATACTCGAAGGTAACATTACTAAGGAAAAATAAACATCGTCGTATTAATAAAGGTTTCTGGGGTCATAAACGACGATAAAAATTTTGAGGGGACTACATGGACTTGTTCTCCTAAAGGAGTGTAGTAAAGGAACACAGACCTGTAGTCCCCATTGTTGACATGAATGAAATGTCCTTCTTTAAAATTTTGACTTTTGATGGACCCTAGTATCACAAAGACACTAAAATAAATTAACACATATCATTAATAGGTCACGGTCT
*************************************.............((((((((((.((.((.((.(((((...............))))).)))).))))))))))))....................((((.((...(((((....))))).)).))))..(((((((.....)))))))********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139170
heart		 SRR139183
lung		 SRR139214
thymus		 TAX577579
breast		 TAX577741
breast		 TAX577738
breast		 SRR040036
cervix		 SRR040018
cervix		 SRR191420
breast		 TAX577743
breast		 TAX577744
breast		 SRR040014
cervix		 TAX577453
breast		 SRR342895
heart		 TAX577588
breast
............................................................................................................................TGGGGTCATACACGACGAT........................................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TGACTTTTGATGGAC.......................................................... 15 0 18 1.00 18 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0
...........................................ATGGCTGCCACGTCTAATAACA...................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GGACCCTAGTATCAC............................................... 15 0 7 1.00 7 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ATAACCGTTAACTAT.................................................................................................................................................................................................................................................................................................. 15 0 12 1.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATGGGGTAATAAACGACGATAA...................................................................................................................................................................................... 22 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................TCTAATAATGCGTGCCACGC............................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................TTTGTGAGGTAATAAACGACGAT........................................................................................................................................................................................ 23 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................TAAGTGATAATGGGTGCCACGA............................................................................................................................................................................................................................................................................... 22 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................GTCATAATGGGTGCCATGA............................................................................................................................................................................................................................................................................... 19 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................TGGGTTCCACGCATCATAACA...................................................................................................................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................TTTGATGGGACCACATGAACTT............................................................................................................................................................ 22 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................GTTATAATGGGTGCCACGA............................................................................................................................................................................................................................................................................... 19 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................TTGTGGTCATAAACGACGAT........................................................................................................................................................................................ 20 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................ATGGGTTCCACGACTAATGACA...................................................................................................................................................................................................................................................................... 22 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................TCTGCGGTAATACACGACGAT........................................................................................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................TCATAATGAGTGCCACGCG.............................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................GCCACGAATAA........................................................................................................................................................................................................................................................................... 11 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................TTGGAGGGGACTGAATGGACTT............................................................................................................................................................ 22 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Generated: 04/21/2015 at 08:27 PM