ID:

emiR_159

 Coordinate:

chr20:51388192-51388415 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.3 -41.6 -41.6

Sense Strand Reads

TCCAGGAAACAAAAACCCATATAATAAAACCCCCACTCAGAGCCTGTTAGTCACCTCTCTAGAAGATGGCATCTCAGGAGAAGGAATGGCTTTGTGGAAGAAGGAATCACCTTTTTCTTGCTCAAGAATTATGCTGACTTCAGCCCTGAGCCTGGATCTGGTCACTGAGAATCATCAAGTGTCTAGATCCTCCCCCCAAAATAACTAATTTAGTAGGTGATTTTGATTTTAAAAAATTGACACCAAAACCCTGCCTGCATTGTAATGGAATTCGAAAAGAATTCATGTTCACAGAACTCAACGTTCAGGCTAATATTTACAGAA
*********************************************************************...((((((.((((......))))..(((((((((.....)))))))))..............((((....))))))))))...((((((((.((((((......)).)))).))))))))......******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039622
liver		 SRR139203
spleen		 SRR139202
spleen		 SRR342894
heart		 TAX577453
breast		 SRR039623
liver		 GSM450602
brain		 SRR039614
liver		 SRR039620
liver		 SRR139168
brain		 SRR139172
kidney		 SRR139174
kidney		 SRR139177
liver		 SRR139186
lung		 SRR139187
lung		 SRR139188
lung		 SRR139201
placenta		 SRR139204
spleen		 SRR139205
spleen		 SRR139215
thymus		 SRR139216
thymus		 SRR191394
breast		 SRR191439
breast		 SRR191601
breast		 SRR330906
skin		 SRR330919
skin		 SRR553572
frontal-cortex		 SRR553576
testes		 TAX577738
breast		 TAX577740
breast		 TAX577744
breast		 SRR191580
breast		 SRR191607
breast		 SRR039617
liver		 SRR015448
breast		 SRR039625
liver		 SRR330905
skin		 TAX577746
breast
.....................................................................................................................................................................TGAGAATCATCAAGTG............................................................................................................................................... 16 0 1 3.00 3 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AACCCCCACTCAGAGCCTGT..................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATGGCTTTGTGGAAGAAGGAATCACCTTT.................................................................................................................................................................................................................. 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGTCTAGATCCTCCCCC................................................................................................................................ 17 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................AAGGAATGGCTTTGTGGAAGAAGGAA.......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGGAATGGCTTTGTGGAAGAAGGAATCA....................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................CATGTTCACAGAACTCAACGTTCAGGCT............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................AATTGACACCAAAACCCTGCCTGCA................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GAATGGCTTTGTGGAAGAAGGAAT......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GACACCAAAACCCTGCCT.................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGAAGATGGCATCTCAGGAGAAGGAAT............................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................AGAACTCAACGTTCAGGCTA............ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................ACCAAAACCCTGCCTGCATT............................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ATCAAGTGTCTAGATC....................................................................................................................................... 16 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AGCCTGGATCTGGTCACTGAGA.......................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GAGCCTGGATCTGGTCACT.............................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GGCATCTCAGGAGAAGGAATGGCT......................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AGAAGGAATGGCTTTGTGGAAGAAGGAAT......................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ATCAAGTGTCTAGATCCTCCC.................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TGAGAATCATCAAGTGT.............................................................................................................................................. 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................AGCCTGTTAGTCACCTCTCTAGAAGATGGC.............................................................................................................................................................................................................................................................. 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CTGAGCCTGGATCTGGTCACTGAG........................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GAAGGAATGGCTTTG...................................................................................................................................................................................................................................... 15 0 15 1.00 15 0 0 0 0 0 0 0 0 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ATCATCAAGTGTCTAGGTCCTCCG.................................................................................................................................. 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AGGAGAAGGAATGGCTTTGTGGAAGAAGG............................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......AACAAAAACCCATATAATA.......................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GCCTGTTAGTCACCTCTCTAGAA.................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GGAATGGCTTTGTGGAAGAAGGAA.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CCTGGATCTGGTCACTGAGAATC....................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TCAGCCCTGAGCCTGGA........................................................................................................................................................................ 17 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AGAAGGAATGGCTTTGTGGAAGAAGGAATCA....................................................................................................................................................................................................................... 31 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GGAGAAGGAATGGCTTTGTGGAAGAAGG............................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................CGTTCAGGCGGATGTTTACAGA. 22 3 5 0.60 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0
...............................................................................GAAGGGATGGCTTTGTGGAAG................................................................................................................................................................................................................................ 21 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................CGTTCAGGCGGATATTTACAGT. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CAAATTTAGAAGGTGATTTTG................................................................................................... 21 2 16 0.19 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0
.........................................................................................................................TCAAGAATTATGCTGATTCCA...................................................................................................................................................................................... 21 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................CGGCCCTGTGCATGGATCTGGTC................................................................................................................................................................. 23 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CAGAACTCGACGGTCACGCT............. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................TAACGGAATTCGAAAAGCA........................................... 19 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................GGAGAAGGAATGGC.......................................................................................................................................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................TCGGGAGAAGGATTGGCTT........................................................................................................................................................................................................................................ 19 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GCCCTGAGCCGGGAACTGGTGA................................................................................................................................................................ 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGGTCCTTTGTTTTTGGGTATATTATTTTGGGGGTGAGTCTCGGACAATCAGTGGAGAGATCTTCTACCGTAGAGTCCTCTTCCTTACCGAAACACCTTCTTCCTTAGTGGAAAAAGAACGAGTTCTTAATACGACTGAAGTCGGGACTCGGACCTAGACCAGTGACTCTTAGTAGTTCACAGATCTAGGAGGGGGGTTTTATTGATTAAATCATCCACTAAAACTAAAATTTTTTAACTGTGGTTTTGGGACGGACGTAACATTACCTTAAGCTTTTCTTAAGTACAAGTGTCTTGAGTTGCAAGTCCGATTATAAATGTCTT
********************************************************************************************************************************...((((((.((((......))))..(((((((((.....)))))))))..............((((....))))))))))...((((((((.((((((......)).)))).))))))))......********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR139165
heart		 SRR139172
kidney		 SRR139200
placenta		 SRR139207
spleen		 SRR330921
skin		 SRR330905
skin		 SRR330922
skin		 SRR342899
heart		 TAX577746
breast		 SRR342900
heart		 TAX577589
breast		 TAX577742
breast		 GSM450598
brain		 SRR342901
heart		 SRR553574
heart		 TAX577744
breast		 RoviraIPAgo2
breast		 SRR039617
liver		 SRR095854
brain		 SRR330913
skin		 SRR342894
heart		 SRR342897
heart
..........................................................................GTCCTCTTCCTTACC........................................................................................................................................................................................................................................... 15 0 20 1.25 25 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ACTCGGACCTAGACCAG................................................................................................................................................................. 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CCAGTGACTCTTAGT...................................................................................................................................................... 15 0 5 1.00 5 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGACTCTTAGTAGTT.................................................................................................................................................. 15 0 12 1.00 12 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................GATCTTCTACCGTAG........................................................................................................................................................................................................................................................... 15 0 10 1.00 10 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TTGAGTTGCAAGTC................ 14 0 4 0.75 3 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TTGGGTATTTCATTTTGGGGGC................................................................................................................................................................................................................................................................................................. 22 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CGGGGCTCGGACCTAGAC.................................................................................................................................................................... 18 1 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TTGGGTTGCAAGTCTGATGATA........ 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................TTTGGGGCTGAGTCTCG......................................................................................................................................................................................................................................................................................... 17 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TTGAGTTGCAAGTCTGATGACA........ 22 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................CAAGTGTCTTGAGTT....................... 15 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................GTTATCTTCTACCGTAGAGT........................................................................................................................................................................................................................................................ 20 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................TGGGTTGCAAGTCCGATGACA........ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................GGACCTAGACCAGT................................................................................................................................................................ 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................CTAGAGTTGCAAGTCC............... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................ACGGACGTAACATT........................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....CTTGTTTTTTGGGTATATTAT.......................................................................................................................................................................................................................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................GAAGTCGGGACTCG............................................................................................................................................................................. 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................CTTAGTGGAA................................................................................................................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................CGGGACTCGGAC.......................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/21/2015 at 07:44 PM