ID:

emiR_152

 Coordinate:

chr20:50752030-50752254 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.5 -19.4 -19.3

Sense Strand Reads

ATGAGCGCCTAGCCAGGAAGCTATCTTTTCTTGAGTTATGAAACTTTGCAACAGTTGTTCAAATTGGTGTTTGTCCTTCCTATAGCTTTCATATTTTCAAATTAATTCTGTATGGCTATATAATTTATGTTTTAAAAGGCAATTCTCTTGACTTTGGAAATATGGAAGTCTCTCCTTTAACCTATTCTTGTTCCCATTCCCAGTCTCATTTGAAATCATTCCTTTTATTGTTAGTGTGTGTATTTTTGTTGGTGTGCTTTTAATGCATCCAAGTATGCATCATTTTGGATAAAAAATACATCCAAATTAAGATGTTTTAACACAT
**************************************************************(((((.................(((((((((((((((((((((.........(((...(((........)))...))).......)))).))))))))))))))))).........(((........))).......)))))...............................****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total RoviraIPAgo2
breast		 SRR039622
liver		 SRR039623
liver		 SRR139179
liver		 SRR139208
testes		 SRR015448
breast		 SRR039612
liver		 SRR039618
liver		 SRR039620
liver		 SRR139177
liver		 SRR139187
lung		 SRR139188
lung		 SRR139190
lung		 SRR139203
spleen		 SRR139210
testes		 SRR139211
testes		 SRR139214
thymus		 SRR191402
breast		 SRR191414
breast		 SRR191565
breast		 SRR191566
breast		 SRR191585
breast		 SRR191587
breast		 SRR191601
breast		 SRR191614
breast		 SRR330917
skin		 SRR330922
skin		 SRR553576
testes		 TAX577453
breast		 TAX577579
breast		 TAX577742
breast		 SRR191589
breast		 SRR444045
skin		 TAX577745
breast		 SRR342899
heart		 SRR342897
heart		 SRR015447
breast		 SRR040022
cervix
.............................................................................TCCTATAGCTTTCATATTTTCAAATT.............................................................................................................................................................................................................................. 26 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCATTCCCAGTCTCATTTGAAATCATT......................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTCTCTTGACTTTGGAAATATGG................................................................................................................................................................ 23 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AATTCTCTTGACTTTGGAAATATGGA............................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTTGTTCCCATTCCCAGTCTCATTTGA................................................................................................................ 27 0 1 2.00 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTGGAAATATGGAAGTCT.......................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................ACTTTGGAAATATGGAAGGCTCT........................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATATTTTCAAATTAATTCTGTATGG.................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AATTCTCTTGACTTTGGAAATATGGAA.............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTTTCAAATTAATTCTGTATGGCTA............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGGAAATATGGAAGTCT.......................................................................................................................................................... 17 0 7 1.00 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TGTGTGTATTTTTGTTGGTGTGCTTTTAATGC........................................................... 32 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TATTCTTGTTCCCATTCCCAGTCTCATT................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GGAAGCTATCTTTTCTTGAGT................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................AATTAATTCTGTATGGCTATATATA......................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CAGTCTCATTTGAAATCA........................................................................................................... 18 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AATTCTGTATGGCTATATA........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGCATCATTTTGGATAAAAAAT............................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTTGTCCTTCCTATAGCTTTCATATT...................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TTTTTGTTGGTGTGCTTTTA............................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCCAGTCTCATTTGAAATCATT......................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CATTTGAAATCATTCCTTTTATTG............................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TAAAAAATACATCCAAAT.................. 18 0 3 1.00 3 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CAAATTAATTCTGTATGGCTAT.............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TATGCATCATTTTGGATAAAA............................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACTTTGGAAATATGGAAGTCT.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TATGGAAGTCTCTCC...................................................................................................................................................... 15 0 5 1.00 5 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AATTCTGTATGGCTATATAA.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACTTTGGAAATATGGAAGTCTCT........................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................AAATTGGTGTTTGTCCTTC...................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTTTGGAAATATGGAAGTC........................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATTTTCAAATTAATTCTGTATG................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTTAGTGTGTGTATTTTTGTTGG......................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TCTTGAGTTATGAAACTTTGCAACAGTTGT........................................................................................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AAGATGTTTTAACACA. 16 0 3 1.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACTTTGGAAATATGGAAGTC........................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TTTTGTTGGTGTGCTTTTAATA............................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTGGAAATATGGAAGTCTC......................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTTTGGAAATATGGAAGTCTCT........................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................GTATTTTTGTTGGTGTGCTTTTAAT............................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GCCTAGCCAGGAAGCTATCTTTT........................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTGGAAATATGGAAGTCTCTC....................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTTTATTGTTAGTGTGTGTATTTTTGTTGGTGTGC.................................................................... 35 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AATTCTGTATGGCTATATAATTT....................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTCTGTATGGCTATATAA.......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TAAAAAATACATCCAAA................... 17 0 5 1.00 5 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTCTGTATGGCTATATA........................................................................................................................................................................................................... 17 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................CTTTCATATCTTCAAATTAATT.......................................................................................................................................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TATGCATCATTTTGGAT................................... 17 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTAAAAGGCAATTCTCT................................................................................................................................................................................. 17 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................CTTGTTCCCATTCCCAG.......................................................................................................................... 17 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................TATGAAACTTTGC.................................................................................................................................................................................................................................................................................... 13 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
......................................................................TTGTCCTTCCTATTGCATTCGT......................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................ACTTTGGAAATATGGAAGTTTTA........................................................................................................................................................ 23 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TACTCGCGGATCGGTCCTTCGATAGAAAAGAACTCAATACTTTGAAACGTTGTCAACAAGTTTAACCACAAACAGGAAGGATATCGAAAGTATAAAAGTTTAATTAAGACATACCGATATATTAAATACAAAATTTTCCGTTAAGAGAACTGAAACCTTTATACCTTCAGAGAGGAAATTGGATAAGAACAAGGGTAAGGGTCAGAGTAAACTTTAGTAAGGAAAATAACAATCACACACATAAAAACAACCACACGAAAATTACGTAGGTTCATACGTAGTAAAACCTATTTTTTATGTAGGTTTAATTCTACAAAATTGTGTA
******************************************************************************************(((((.................(((((((((((((((((((((.........(((...(((........)))...))).......)))).))))))))))))))))).........(((........))).......)))))...............................************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR139190
lung		 SRR039624
liver		 SRR553572
frontal-cortex		 SRR330912
skin
.....................................................................................................................................................................................................................................................AACAACCACACGAAA................................................................. 15 0 16 1.00 16 16 0 0 0
.........................................................................................................................................................................................................................................................................ATAGATTCATACGTAGTACAACC..................................... 23 3 9 0.11 1 0 1 0 0
.................................................................................................................................................................................................GGTAAGGGTCAGAGT..................................................................................................................... 15 0 18 0.06 1 0 0 1 0
....................................................................................................................................................................................................AAGGGTCAGAGTA.................................................................................................................... 13 0 20 0.05 1 0 0 0 1

Generated: 04/21/2015 at 07:40 PM