ID:

emiR_112

 Coordinate:

chr18:23544386-23544613 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.6 -35.4 -35.3
mature
  1. chr18:23544485-23544499 -
  2. chr18:35190857-35190871 +
  3. chr21:40662802-40662816 +
  4. chr8:116787137-116787151 +
star
  1. chr1:211726078-211726092 -
  2. chr18:23544417-23544431 -
  3. chr19:29023262-29023276 +

Sense Strand Reads

CCTCTCTGAAACACAGAATTGTACATTCAACTCTAGGTTTAATACAGCCCTGTAAAGTAAAAAGGAGGACCTTTTAGTAACAAGTGGGACAGACAACCCTGTAACTAATTGGTGATTGTGTCTGTCGCCTCTCTCAGGTGGATTCGAAGGTCTCACTAGGCATCGCGGGCATCTTGATCGTGCTGAGCTCGGTGGCTTGCTCCTTGGGTGTCTTCAGCTACATTGGGTTGCCCTTGACCCTCATTGTGATTGAAGTCATCCCGTTCCTGGTGCTGGCTGTTGGAGTGGACAACATCTTCATTCTGGTGCAGGCCTACCAGGTATACTT
*****************************************************************************************************************************************************((((....)))).....(((((.....((((.((...)).))))....)))))...(((((.((((((.((((..(((((......)))))....)))).)))))).))))).****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553572
frontal-cortex		 SRR039620
liver		 RoviraIPAgo2
breast		 SRR139186
lung		 SRR139215
thymus		 SRR139165
heart		 SRR139201
placenta		 SRR139208
testes		 SRR139209
testes		 SRR139210
testes		 SRR139214
thymus		 SRR139216
thymus		 SRR139217
thymus		 SRR330922
skin		 TAX577743
breast		 GSM450599
brain		 SRR039615
liver		 SRR039622
liver		 SRR040010
cervix		 SRR094129
uterus		 SRR095854
brain		 SRR139167
heart		 SRR139171
kidney		 SRR139172
kidney		 SRR139177
liver		 SRR139184
lung		 SRR139192
ovary		 SRR139198
placenta		 SRR139211
testes		 SRR139219
thymus		 SRR191404
breast		 SRR191566
breast		 SRR330904
skin		 SRR330907
skin		 SRR330919
skin		 SRR342894
heart		 SRR342897
heart		 SRR342901
heart		 SRR553573
cerebellum		 TAX577579
breast		 TAX577588
breast		 TAX577744
breast		 TAX577745
breast		 TAX577740
breast		 SRR040014
cervix		 SRR094131
uterus		 SRR444060
skin		 TAX577741
breast		 GSM450597
brain		 TAX577589
breast		 TAX577590
breast
....................................................................................................................................................................GCGGGCATCTTGATC..................................................................................................................................................... 15 0 4 5.00 20 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 4 4 0 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CATCTTGATCGTGCTGAG............................................................................................................................................. 18 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGAAGGTCTCACTAGGCATCGCGGGCAT............................................................................................................................................................ 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTTGACCCTCATTGT................................................................................. 15 0 3 3.00 9 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGAAGGTCTCACTAGGCAT..................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GATCGTGCTGAGCT........................................................................................................................................... 14 0 4 2.00 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTCACTAGGCATCGCGGGCATCT.......................................................................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCACTAGGCATCGCGGGCATC........................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TGTGATTGAAGTCATCCCGT................................................................ 20 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GTTCCTGGTGCTGGCTGTTGG............................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................ACCCTCATTGTGATTGAAGTCATCCC.................................................................. 26 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTACATTGGGTTGCCCTT............................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGAAGGTCTCACTAGGAATCGCGGGCAT............................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TGACCCTCATTGTGATTGAAGTCATCC................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGATCGTGCTGAGC............................................................................................................................................ 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACTAGGCATCGCGGGCATCTTGAT...................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TGGACAACATCTTCATTCTGGTGCA.................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGGTGCTGGCTGTTGGAGTG......................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGGCATCGCGGGCATCTTGATCG.................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................ATTGTGATTGAAGTCATCCCGT................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GGCTGTTGGAGTGGAC...................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TCTTGATCGTGCTGAGCTCGG........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTCACTAGGCATCGCGGGCATCA.......................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CATCTTGATCGTGCTGAGCT........................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCACTAGTCATCGCGGGCATA........................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCACTAGGCATCGCGGGCATCA.......................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCACTAGGCATCGCGGGCATT........................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCACTAGGCATCGCGGGCATA........................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCACTAGGCATCGCAGGCATCTT......................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ATCTTGATCGTGCTGAGCTC.......................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCGTGCTGAGCTCGGTGG..................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTCACTAGGCATCGCGGGCATTT.......................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CTAGGCATCGCGGGCATC........................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGGCATCGCGGGCATCT.......................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CACTAGGCATCGCGGGCATCTTGA....................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTGGATTCGAAGGTCTCACTAGGGATC.................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACTAGGCATCGCGGGCATCTTG........................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GGTGCTGGCTGTTGGAGTGGACAACA.................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGATCGTGCTGAGCTCGGTGGCTTGCTTC............................................................................................................................. 30 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TTGAAGTCATCCCGGACCTG........................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................CTTCTGGTGGATTCGAAGGTCTCACTAGGCATC.................................................................................................................................................................... 33 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGTAACTAATTGGTGATTGTGTCTG............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................AGTCATCCCGTTCCTGGTGC....................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GACCCTCATTGTGATTGAAGTCATCC................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TGAAGTCATCCCGTTC.............................................................. 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGGTGCTGGCTGTTGGAGTGGGCAACA.................................. 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGAGGCATCGCGGTCATCT.......................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TCCTGGTGATGGCTGTTGGA............................................ 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................CCGGTGGCTTGCACCTTGGGT....................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................CAACACTGTAGCTCATTGGTGAT.................................................................................................................................................................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................ATTGTGATTGAAGTC....................................................................... 15 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TCCCATGTGGATTCGAATGTCT............................................................................................................................................................................... 22 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................TGAAGTCATCC................................................................... 11 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TGCGGGCCTACCATGTATATTT 22 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................AGCTACATTGGGTTGCT................................................................................................ 17 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................GTGGATTCGAAGG.................................................................................................................................................................................. 13 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CACTAGGCATCGCGAGT.............................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................CAGCTACATTGGGTTTC................................................................................................. 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................TCCTGGGGCTGGCTGTTTGA............................................ 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................TTGAAGTAATCCCGTTCA............................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGAGAGACTTTGTGTCTTAACATGTAAGTTGAGATCCAAATTATGTCGGGACATTTCATTTTTCCTCCTGGAAAATCATTGTTCACCCTGTCTGTTGGGACATTGATTAACCACTAACACAGACAGCGGAGAGAGTCCACCTAAGCTTCCAGAGTGATCCGTAGCGCCCGTAGAACTAGCACGACTCGAGCCACCGAACGAGGAACCCACAGAAGTCGATGTAACCCAACGGGAACTGGGAGTAACACTAACTTCAGTAGGGCAAGGACCACGACCGACAACCTCACCTGTTGTAGAAGTAAGACCACGTCCGGATGGTCCATATGAA
******************************************************************((((....)))).....(((((.....((((.((...)).))))....)))))...(((((.((((((.((((..(((((......)))))....)))).)))))).))))).***************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total RoviraIPAgo2
breast		 TAX577588
breast		 SRR039621
liver		 SRR330904
skin		 SRR330905
skin		 TAX577739
breast		 TAX577740
breast		 SRR040008
cervix		 SRR330912
skin		 TAX577744
breast
.........................................................................................................................................CGCCTAAGCCTCCAGAGTG............................................................................................................................................................................ 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GGGTGATCCGTTGCGCCCG.............................................................................................................................................................. 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AGTAATCCGTAGCGCCAG.............................................................................................................................................................. 18 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0
............................................................................CATTGTTCACCCT............................................................................................................................................................................................................................................... 13 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
......................................................................................CTTGTCTGTTGGCATATTGATT............................................................................................................................................................................................................................ 22 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................TAGCCCGACTAGAGCCATCGA................................................................................................................................... 21 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................GGTGATCCGTTGCGCCCG.............................................................................................................................................................. 18 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................CATTAGCGCCCGTAAAACTA...................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............GTCTTAACATGT............................................................................................................................................................................................................................................................................................................... 12 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................GGCAAGGACC.......................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................TAGCACGACTC............................................................................................................................................. 11 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Generated: 04/21/2015 at 07:59 PM