ID:

eca-mir-9a

 Coordinate:

chr5:41824838-41824916 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.7 -39.6 -39.5
mature

  1. eca-mir-9a  chr5:41824848-41824870 +
  2. eca-mir-9a-2  chr14:78843156-78843178 +
star

  1. eca-mir-9a  chr5:41824888-41824909 +
  2. eca-mir-9a-2  chr14:78843194-78843215 +

Sense Strand Reads

cagcggaggGGCTGCGTGGAAGAGGCGGCGGCGGCAGCCAGGAGGCGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCATACACTGCGCAGAGGGGCCCCAGAAAAGCTGGCCGCATGGACGGG

*********************************************.(((((((....((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))...)))))))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................TCTTTGGTTATCTAGCTGTATGA................................................................................................ 23 0 2 48.00 96 96
............................................................TCTTTGGTTATCTAGCTGTATGT................................................................................................ 23 1 2 5.00 10 10
............................................................TCTTTGGTTATCTAGCTGTATGAT............................................................................................... 24 1 2 3.00 6 6
............................................................TCTTTGGTTATCTAGCTGTATGAGTGCCA.......................................................................................... 29 3 2 2.50 5 5
............................................................TCTTTGGTTATCTAGCTGTATG................................................................................................. 22 0 2 2.50 5 5
............................................................TCTTTGGTTATCTAGCTGTATGTT............................................................................................... 24 2 2 2.50 5 5
............................................................TCTTTGGTTATCTAGCTGTATGAGTGGTGT......................................................................................... 30 0 1 2.00 2 2
............................................................TCTTTGGTTATCTAGCTGTA................................................................................................... 20 0 2 2.00 4 4
............................................................TCTTTGGTTATCTAGCTGTATGAGTGCC........................................................................................... 28 2 2 1.50 3 3
............................................................TCTTTGGTTATCTAGCTGTATGAAA.............................................................................................. 25 2 2 1.50 3 3
............................................................TCTTTGGTTATCTAGCTGTATGAA............................................................................................... 24 1 2 1.50 3 3
............................................................TCTTTGGTTATCTAGCTGTATGAGTGGTGG......................................................................................... 30 1 1 1.00 1 1
............................................................TCTTTGGTTATCTAGCTGTATGAGTGGTG.......................................................................................... 29 0 1 1.00 1 1
............................................................TCTTTGGTTATCTAGCTTTATGA................................................................................................ 23 1 2 1.00 2 2
............................................................TCTTTGGTTATCTAGCTGTATGAGTGCCAT......................................................................................... 30 3 2 1.00 2 2
............................................................TCTTTGGTTATCGAGCTGTATGA................................................................................................ 23 1 2 1.00 2 2
............................................................TCTTTGGTTATGTAGCTGTATGA................................................................................................ 23 1 2 1.00 2 2
............................................................TCTTTGGTTATCTAGCTGTATGAGTGGTGTG........................................................................................ 31 0 1 1.00 1 1
............................................................TCTTTGGTTATCTAGCTGTATGATT.............................................................................................. 25 1 2 1.00 2 2
............................................................TCTTTGGTTATCTAGCTGTGTGA................................................................................................ 23 1 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTAT.................................................................................................. 21 0 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTATGC................................................................................................ 23 1 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTATGCT............................................................................................... 24 2 2 0.50 1 1
............................................................TATTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 2 0.50 1 1
............................................................GCTTTGGTTATCTAGCTGTATGA................................................................................................ 23 1 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTATGATTAC............................................................................................ 27 3 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTTTGT................................................................................................ 23 2 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCAGTATGAA............................................................................................... 24 2 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTATGTA............................................................................................... 24 2 2 0.50 1 1
............................................................TCTTTGGTTATGTAGCTGTATAA................................................................................................ 23 2 2 0.50 1 1
....................................................................................................TAAAGCTAGATAACCGAAAGTA......................................................... 22 0 2 0.50 1 1
....................................................................................................TAAAGCTAGATAACCGAAAGT.......................................................... 21 0 2 0.50 1 1
............................................................TCTTTGATTATCTAGCTGTATGA................................................................................................ 23 1 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTATGAAT.............................................................................................. 25 1 2 0.50 1 1
...................................................................................................ATAAAGCTAGATAACCGAAAGT.......................................................... 22 0 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTGT.................................................................................................. 21 1 2 0.50 1 1
.............................................................CTTTGGTTATCTAGCTGTATGAA............................................................................................... 23 1 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTATGAGT.............................................................................................. 25 0 2 0.50 1 1
............................................................TCTTTGGTTATCTAGCTGTATGATTT............................................................................................. 26 2 2 0.50 1 1
............................................................TCTTTGGTTATCTAGC....................................................................................................... 16 0 3 0.33 1 1
............................................................TCTTTGGTTATGTAGCTGTATTA................................................................................................ 23 2 3 0.33 1 1
............................................................TCTTTGGTTATGTAGCTGTATGTT............................................................................................... 24 3 5 0.20 1 1
............................................................TCTTTGGTTGTCTAGCTGTATGTT............................................................................................... 24 3 5 0.20 1 1

Anti-sense strand reads

GTgGggTggCCGACGCACCTTCTCCGCCGCCGCCGTCGGTCCTCCGCCCCAACCAACAATAGAAACCAATAGATCGACATACTCACCACACCTCAGAAGTATTTCGATCTATTGGCTTTCATTTTTATTGGGGTATGTGACGCGTCTCCCCGGGGTCTTTTCGACCGGCGTACCTGCCC

******************************************.(((((((....((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))...)))))))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:05 PM