ID:

eca-mir-9182

 Coordinate:

chr18:65487257-65487395 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.5 -38.3 -38.3

Sense Strand Reads

TCTCAGTGGCTGAGTTTTATGACGGGCCCGGTGCTCGAGGGCAGGGAGCAACTGATGGTGCTACTTTGAACTGCTTTTCTTTTCTCCTTTTTGCACAAAGAGTCTCATGTCTGATATTTAGACATGATGAGCTTTGTGCAAAAGGGGACCTGGTTACTGCTTGCTCTGCTTCATCCCACTCTTATTCTGGCACAACAGGAAGGTGAGTAGGTACTGATTTCCAGAAACTTTACGGGGGT

****************************************************************..................((.(((((((((((((((..((((((((((((...)))))))))).)).)))))))))))))))))...((.....((.......)).....))...............************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............GTTTTATGACGGGCC................................................................................................................................................................................................................... 15 0 1 4.00 4 4
..................................TCGAGGGCAGGGAGCAACTGATGGTGCTAC............................................................................................................................................................................... 30 0 1 2.00 2 2
.........................................................................................................................ACATGATGAGCTTTGTGCAAAT................................................................................................ 22 1 1 2.00 2 2
.........................................CAGGGAGCAACTGATGGTGCTACTTTGAACTGCT.................................................................................................................................................................... 34 0 1 2.00 2 2
..................................................................................................................................................GACCTGGTTACTGCTTGCTCTGCTTCATCC............................................................... 30 0 1 1.00 1 1
...............................................................................TTTTCTCCTTTTTGCACAAAGAGTCTCATGTCTGA............................................................................................................................. 35 0 1 1.00 1 1
.........................................................................................................................ACATGATGAGCTTTGTGCAAAAGGGGACC......................................................................................... 29 0 1 1.00 1 1
................................................CAACTGATGGTGCTACT.............................................................................................................................................................................. 17 0 1 1.00 1 1
......................................................................................................................TAGACATGATGAGCTTTGTGCAAAAGGGGACCTGGTT.................................................................................... 37 0 1 1.00 1 1
..........................................................................................TTGCACAAAGAGTCTCATGTCT............................................................................................................................... 22 0 1 1.00 1 1
....................................................................................................................................................................................CTTATTCTGGCACAACA.......................................... 17 0 1 1.00 1 1
.....................................................GATGGTGCTACTTTGAACTGCTTTTCTTTTCTCCTTTTTGC................................................................................................................................................. 41 0 1 1.00 1 1
.........................................................................................................................................GCAAAAGGGGACCTGGTTACTGCTTGCTCTGCTTCA.................................................................. 36 0 1 1.00 1 1
.............................................GAGCAACTGATGGTGCTACTTTGAACT....................................................................................................................................................................... 27 0 1 1.00 1 1

Anti-sense strand reads

AGAGTCACCGACTCAAAATACTGCCCGGGCCACGAGCTCCCGTCCCTCGTTGACTACCACGATGAAACTTGACGAAAAGAAAAGAGGAAAAACGTGTTTCTCAGAGTACAGACTATAAATCTGTACTACTCGAAACACGTTTTCCCCTGGACCAATGACGAACGAGACGAAGTAGGGTGAGAATAAGACCGTGTTGTCCTTCCACTCATCCATGACTAAAGGTCTTTGAAATGCCCCCA

************************************************..................((.(((((((((((((((..((((((((((((...)))))))))).)).)))))))))))))))))...((.....((.......)).....))...............**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:46 AM