ID:

eca-mir-9180

 Coordinate:

chr19:33436526-33436646 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.3 -49.3 -49.2

Sense Strand Reads

CCTGCCACCCTGCCTTCCCTTGGCCCACTACCAAGGAGTCACTCCCAACCCTGCAGGGCTGCCTGGTGGCCACGTCTGGAGCCCCTTTAAGAGGTCCCCAGCCTGTGCCTGGGGAGGGCTTGGACCTCTGATGGGAGCCCAGAAACAGCCACCCCTTCTCCGTCATCTCCAGACCTTTCTTCTGTGGGCCTTCTAGAAGGTCAGgtgtgtagggtaggcag

****************************************************************((((((....(((((.(((((....((((((((..(((((...((...)).))))).))))))))...))).)))))))....))))))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................................................................CTTGGACCTCTGATGGGAGC................................................................................... 20 0 1 4.00 4 4
......................................................................................................................CTTGGACCTCTGATGGGAGCC.................................................................................. 21 0 1 4.00 4 4
......................................................................................................................CTTGGACCTCTGATGGGAG.................................................................................... 19 0 1 4.00 4 4
......................................................................................................................CTTGGACCTCTGATGGGAGCCC................................................................................. 22 0 1 2.00 2 2
......................................................................................................................CTTGGACCTCTGATGGGAGCCCTAAT............................................................................. 26 3 1 1.00 1 1
......................................................................................................................CTTGGACCTCTGATGGGAGA................................................................................... 20 1 1 1.00 1 1
......................................................................................................................GTTGGACCTCTGATGGGAGCCCAAAT............................................................................. 26 3 1 1.00 1 1
......................................................................................................................CTTGGACCTCTGATGGGAGT................................................................................... 20 1 1 1.00 1 1
.......................................................................................................................TTGGACCTCTGATGGGAGCCCTA............................................................................... 23 2 1 1.00 1 1
.......................................................................................................................TTGGACCTCTGATGGGAGCCCATG.............................................................................. 24 2 1 1.00 1 1
......................................................................................................................CTTGGACCTCTGATGGGAGCCCGAAA............................................................................. 26 2 1 1.00 1 1
.......................................................................................................................TTGGACCTCTGATGGGAGCCC................................................................................. 21 0 1 1.00 1 1
......................................................................................................................CATGGACCTCTGATGGGAGCCCA................................................................................ 23 1 1 1.00 1 1
.......................................................................................................................TTGGACCTCTGATGGGAGCCCAAT.............................................................................. 24 2 1 1.00 1 1
...............................................................................AGCCCCTTTAAGAGGTCCCCAGCC...................................................................................................................... 24 0 1 1.00 1 1
............................TACCAAGGAGTCACTCCCAACCCTGCAGGGC.................................................................................................................................................................. 31 0 1 1.00 1 1
......................................................................................................................CTTGGACCTCTGATGGGAGCCCA................................................................................ 23 0 1 1.00 1 1

Anti-sense strand reads

GGACGGTGGGACGGAAGGGAACCGGGTGATGGTTCCTCAGTGAGGGTTGGGACGTCCCGACGGACCACCGGTGCAGACCTCGGGGAAATTCTCCAGGGGTCGGACACGGACCCCTCCCGAACCTGGAGACTACCCTCGGGTCTTTGTCGGTGGGGAAGAGGCAGTAGAGGTCTGGAAAGAAGACACCCGGAAGATCTTCCAGTCgtgtgtTgggtTggGTg

********************************************************************((((((....(((((.(((((....((((((((..(((((...((...)).))))).))))))))...))).)))))))....))))))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:47 AM