ID:

eca-mir-9173

 Coordinate:

chr16:1841484-1841626 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.0 -32.4 -32.4 -32.3

Sense Strand Reads

ACTCTTTTTCCAGAAGGTGGAAAACTTGGGGTTCTTACAAGTGGAACCATTTCTTCCCAGTCTTCACCTGAGGGGCTTTCTTCTGACCTGAGGCAGCCTCTTCTAGGCTGTGCCCCGTAGCCGTGCTGCCTCACGTGAGCCTGGATTCTGCCCAGAGACGGAGAGAGGCTGGAATTGCTGAGACCTGGGAGTGCAGGATATTCTGCTGGTTTAGGAGACTTCACAGTGGAAGCTGGCGCTTGC

*************************************************************************************.....((.(((((((((((((((((((....(((((...)))))..))))...)))))))..................))))))))......)).*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................................................................................................................................TAGGAGACTTCACAGTGGAAGCTGGCGC.... 28 0 1 2.00 2 2
.......................................................................................................................................TGAGCCTGGATTCTGCCCAGAGACGGAGAG.............................................................................. 30 0 1 1.00 1 1
.......................................................................................................................................TGAGCCTGGATTCTGCCCA......................................................................................... 19 0 1 1.00 1 1
.................................................................................................................................CTCACGTGAGCCTGGATTCTGCCC.......................................................................................... 24 0 1 1.00 1 1
..............................................................TTCACCTGAGGGGCTTTCTTCTGAAT........................................................................................................................................................... 26 2 1 1.00 1 1
...................................................................................................................................................................................................................TAGGAGACTTCACAGTGGAAGCTGGCGCTT.. 30 0 1 1.00 1 1
....................................................................................................................................................................................................................AGGAGACTTCACAGTGGAAGCTGGCGC.... 27 0 1 1.00 1 1
.....................................................................................................................................................GCCCAGAGACGGAGAGAGGCTGGAATTGCTGAGACCT......................................................... 37 0 1 1.00 1 1
...................................................................................................................................................................................................................TAGGAGACTTCACAGTGGAAGCTGGCT..... 27 1 1 1.00 1 1
....................................................................................................TTCTAGGCTGTGCCCCGTAGCCGTGC..................................................................................................................... 26 0 1 1.00 1 1

Anti-sense strand reads

TGAGAAAAAGGTCTTCCACCTTTTGAACCCCAAGAATGTTCACCTTGGTAAAGAAGGGTCAGAAGTGGACTCCCCGAAAGAAGACTGGACTCCGTCGGAGAAGATCCGACACGGGGCATCGGCACGACGGAGTGCACTCGGACCTAAGACGGGTCTCTGCCTCTCTCCGACCTTAACGACTCTGGACCCTCACGTCCTATAAGACGACCAAATCCTCTGAAGTGTCACCTTCGACCGCGAACG

***************************************************************.....((.(((((((((((((((((((....(((((...)))))..))))...)))))))..................))))))))......)).************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............TTCCACCTTTTGAACCCCAAGAATGTTCACCTT..................................................................................................................................................................................................... 33 0 1 2.00 2 2
.......................................................................................................................................................................................................TAAGACGACCAAATCCTCTGAAGTGTCACCTT............ 32 0 1 1.00 1 1
............................TTCAAGAATGTTCACCTTGGTAAAGAAGGGT........................................................................................................................................................................................ 31 2 1 1.00 1 1
......TAAGGTCCTCCACCTTTTGAACCCCAAGAAT.............................................................................................................................................................................................................. 31 2 1 1.00 1 1
...............CCACCTTTTGAACCCCAAGAATGTTCACCT...................................................................................................................................................................................................... 30 0 1 1.00 1 1

Generated: 09/01/2015 at 11:43 AM