ID:

eca-mir-9170

 Coordinate:

chr16:18046864-18046984 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.0 -21.7 -21.6

Sense Strand Reads

CCACGTTTTCTTATCTTCTCTATCCACAGCATGACTTGGGCAAATTTCCAGAGTCCTGGGCCATCTAGAGAGGCGGTAGTTACAGGgtTGGGTGTgTTTGGGGTgtGTgtGGggTGGGTTTGgtTggTGGgTgTgggtgTTtTTtGgTGTGTGtTgTTGGGgttGTTTgTTgtgTTgTgTGTGggTgtGTTTtgTgtTgTtTttttTGGTGtgtGgtggTG

***********************************((.(((((....((((((.((((.(((..((((..((((.....(((((...((.((.....)).)).....))))).....))))..))))..))).))))....))))))......))))).)).........................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................................................................................TGGGCAAGTTTCTTCACTTCTCTGTGCCT................................... 29 0 1 22.00 22 22
.............................................................................................................................................................TGGGCAAGTTTCTTCACTTCTCTGTGCC.................................... 28 0 1 7.00 7 7
.....................................................................................................................................................TGTGATCTTGGGCAAGTTTCTTCACTTCTC.......................................... 30 0 1 3.00 3 3
.................................................................................................................................................................................................CTCATCTATAAAATGGTGACAGCACCTG 28 0 1 2.00 2 2
........................................................................GCGGTAGTTACAGGCATGGGTGTCTTTGGT....................................................................................................................... 30 1 1 2.00 2 2
...............................TGACTTGGGCAAATTTCCAGAGTCCTGGGCCT.............................................................................................................................................................. 32 1 1 2.00 2 2
..........................................................................................................................................................TCTTGGGCAAGTTTCTTCACTTCTCTGTGCCT................................... 32 0 1 2.00 2 2
...............................................................TCTAGAGAGGCGGTAGTTACAGGCATGGA................................................................................................................................. 29 1 1 1.00 1 1
.............................................................................................................................................................TGGGCAAGTTTCTTCACTTCTGTGTGCCT................................... 29 1 1 1.00 1 1
...............................................................................................................................................TAGCTGTGTGATCTTGGGCAAGTTTCTTCACT.............................................. 32 0 1 1.00 1 1
...............TTCTCTATCCACAGCATGACTTGGGC.................................................................................................................................................................................... 26 0 1 1.00 1 1
................................................................................................TTTGGGGTCAGTCAGGCCTGGGTTTGCATC............................................................................................... 30 0 1 1.00 1 1
.................................................................TAGAGAGGCGGTAGTTACAGGCATGGGTTTTTT........................................................................................................................... 33 2 1 1.00 1 1
.............................................................................................................................................................................................TTTACTCATCTATAAAATGGTGACAGCACCTG 32 0 1 1.00 1 1
...............................TGACTTGGGCAAATTTCCAGAGTCCTGGGCA............................................................................................................................................................... 31 1 1 1.00 1 1
......TTTCTTATCTTCTCTATCCACAGCATGACT......................................................................................................................................................................................... 30 0 1 1.00 1 1
...............................TGACTTGGGCAAATTTCCAGAGTCCTGGGC................................................................................................................................................................ 30 0 1 1.00 1 1
................................................................................................................................................AGCTGTGTGATCTTGGGCAAGTTTCTTCACT.............................................. 31 0 1 1.00 1 1
.....................................................................................................................................................TGTGATCTTGGGCAAGTTTCTTCACTTCTCT......................................... 31 0 1 1.00 1 1
......................................................................................................................TTTGCATCCTGGCTCTCCCACTTGTTAGCTG........................................................................ 31 1 1 1.00 1 1
....................................................................................................................................................................................................ATCTATAAAATGGTGACAGCAGCTG 25 1 1 1.00 1 1
........TCTTATCTTCTCTATCCACAGCATGACTTGT...................................................................................................................................................................................... 31 1 1 1.00 1 1
.............................................................................................................................................................TGGGCAAGTTTCTTCACTTTTCTGTGCCT................................... 29 1 1 1.00 1 1
......................................................................................................................................................GTGATCTTGGGCAAGTTTCTTCACTTC............................................ 27 0 1 1.00 1 1
......................................................................................................................................................GTGATCTTGGGCAAGTTTCTTCACTTCTCTGT....................................... 32 0 1 1.00 1 1
.............................................................................................................................................................TGGGCAAGTTTCTTCACTTCTCTGTGCCG................................... 29 1 1 1.00 1 1
............................................................................................TGACTTTGGGGTCGGTCAGGCCTGGGTTT.................................................................................................... 29 2 2 0.50 1 1
.....................................................................................................................................................TGTGATCTTGGGCAAGTTTCTTCACTTCATT......................................... 31 2 2 0.50 1 1

Anti-sense strand reads

GGTGCAAAAGAATAGAAGAGATAGGTGTCGTACTGAACCCGTTTAAAGGTCTCAGGACCCGGTAGATCTCTCCGCCATCAATGTCCgtACCCACAgAAACCCCAgtCAgtCCggACCCAAACgtAggACCgAgAgggtgAAtAAtCgACACACtAgAACCCgttCAAAgAAgtgAAgAgACACggAgtCAAAtgAgtAgAtAttttACCACtgtCgtggAC

***********************************((.(((((....((((((.((((.(((..((((..((((.....(((((...((.((.....)).)).....))))).....))))..))))..))).))))....))))))......))))).)).........................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................................................................................................................................AGAGACACGGAGTCAAATGAGTAGATAT.................. 28 0 2 0.50 1 1
...............................................................................................................................................................................AGAGACACGGAGTCAAATGAGTAGATAAT................. 29 1 4 0.50 2 2
.................................................................................................................................................................................AGACACGGAGTCAAATGAGTAGATAT.................. 26 0 4 0.25 1 1
...............................................................................................................................................................................AGAGACACGGAGTCAAATGAGTAGA..................... 25 0 15 0.20 3 3
...............................................................................................................................................................................AGAGACACGGAGTCAAATGAGT........................ 22 0 20 0.10 2 2
...............................................................................................................................................................................AGAGACACGGAGTCAAATGAGTAG...................... 24 0 16 0.06 1 1
.........................................................................................................................................................................AAATGAAGAGACACGGAGTCAAAAGAGTAGATAT.................. 34 2 18 0.06 1 1
..............................................................................................................................................................................AAGAGACACGGAGTCAAATGAGTAGACATT................. 30 1 20 0.05 1 1

Generated: 09/01/2015 at 11:44 AM