ID:

eca-mir-9161

Coordinate:

chr14:10824456-10824574 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.8 -49.8 -49.8

Sense Strand Reads

TGTGGGGTCGAAGGCAGGCCAAGGTTACTCGGTTTTAAATGATCCTAATGCGGTTGGGGTGGGCGAGGACTTGACTTTTCCAGGCCACCTCAGGCCCCGTCTTCAGCCGCCCGGCAGACGGGCCTCTAGGTCGCCTGGCCTGCGTTCCCCGGGGCCGGGGCTGCTCATGGCGTCGGTAGGGCCCGGCCGTTTGGGTCAGGCGGCGAGAGGGCGGTTGGC

********************************************************(((.((((((((...........((((((.((((.((((((.((((...(((....)))))))))))))..)))).))))))))).))))))))....*****************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................................................ACGGGCCTCTAGGTCGCCTGGC................................................................................ 22 0 1 1.00 1 1
.......................................................................TGACTTTTCCAGGCCACCTCAGGCCCCGTC...................................................................................................................... 30 0 1 1.00 1 1

Anti-sense strand reads

ACACCCCAGCTTCCGTCCGGTTCCAATGAGCCAAAATTTACTAGGATTACGCCAACCCCACCCGCTCCTGAACTGAAAAGGTCCGGTGGAGTCCGGGGCAGAAGTCGGCGGGCCGTCTGCCCGGAGATCCAGCGGACCGGACGCAAGGGGCCCCGGCCCCGACGAGTACCGCAGCCATCCCGGGCCGGCAAACCCAGTCCGCCGCTCTCCCGCCAACCG

*****************************************************************(((.((((((((...........((((((.((((.((((((.((((...(((....)))))))))))))..)))).))))))))).))))))))....********************************************************
Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................................................................................................CCCCGGCCCCGACGAGTACCGCAGGCAT......................................... 28 1 1 4.00 4 4
.................CGGTTCCAATGAGCCAAAATTTACTAGGATT........................................................................................................................................................................... 31 0 1 3.00 3 3
.......................................................................................................................................................CCCGGCCCCGACGAGTACCGCAGGCAT......................................... 27 1 1 2.00 2 2
..............GTCCGGTTCCAATGAGCCAAAATTTACTAGG.............................................................................................................................................................................. 31 0 1 2.00 2 2
.................CGGTTCCAATGAGCCAAAATTTACTAGGAT............................................................................................................................................................................ 30 0 1 1.00 1 1
................CCGGTTCCAATGAGCCAAAATTTACTAGGA............................................................................................................................................................................. 30 0 1 1.00 1 1
.............................................................................................CGGGCCAGAAGTCGGCGCTCCGTCT..................................................................................................... 25 3 1 1.00 1 1
................CCGGTTCCAATGAGCCAAAATTTACTAGGAT............................................................................................................................................................................ 31 0 1 1.00 1 1
......................................................................................................................................................TCCCGGCCCCGACGAGTACCGCAGGCAT......................................... 28 2 1 1.00 1 1
.............TGTCCGGTTCCAATGAGCCAAAATTTACTAGG.............................................................................................................................................................................. 32 1 1 1.00 1 1
.......................................................................................GGAGTCCGGGGCAGAAGTCGGCGGGCCGTCT..................................................................................................... 31 0 1 1.00 1 1
....................................................................................................................................................GGCCCCGGCCCCGACGAGTACCGCAGGCAT......................................... 30 1 1 1.00 1 1

Generated: 09/01/2015 at 11:40 AM