ID:

eca-mir-9150

 Coordinate:

chr15:28902994-28903098 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.5 -28.4
mature

  1. eca-mir-9150  chr15:28903054-28903076 -
  2. chrUn:50619452-50619474 +
star

  1. eca-mir-9150  chr15:28903019-28903044 -
  2. chr15:28924995-28925020 -
  3. chr15:29287756-29287781 +
  4. chr15:29314921-29314946 +
  5. chrUn:50619484-50619509 +
  6. chrUn:117182038-117182063 +

Sense Strand Reads

GCATTCGGGGTCCTCCCCTTTCCTTCTCCTCTGAGTGTATCCAGTGTGGCAGTTGCTGTAGCCTCCTCCCTCTTGGAAACAGCCACTGTAGAATGATGGGCCTCTAGGGTTCTCTGTCGGCCATGGTTGTGTTCAAGGCCGAGCAACATGCAGAGGAGAATAGTGAGAGAAAGAGGAGGACATTCGTGGAGAATAGGGAAGAGGC

*********************************************************........(((..(((((((.(((((((..((.((..((.((((((...))))))))..)).))..))))))).)))))))..)))..************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................................TTGGAAACAGCCACTGTAGAATGTTGGGCCT...................................................................................................... 31 1 2 82.00 164 164
........................................................................TTGGAAACAGCCACTGTAGAATGTTGGGCC....................................................................................................... 30 1 2 49.50 99 99
......................................................................TCTTGGAAACAGCCACTGTAGAATGTTGGGC........................................................................................................ 31 1 2 32.00 64 64
........................................................................TTGGAAACAGCCACTGTAGAATGTTGGGC........................................................................................................ 29 1 2 19.50 39 39
..........................................................................GGAAACAGCCACTGTAGAATGTTGGGCCT...................................................................................................... 29 1 2 6.00 12 12
........................................................................TTGGAAACAGCCACTGTAGAATGTTGGGCCTT..................................................................................................... 32 2 2 5.50 11 11
..........................................................................GGAAACAGCCACTGTAGAATGTTGGGCCTC..................................................................................................... 30 1 2 4.50 9 9
......................................................................TCTTGGAAACAGCCACTGTAGAATGTTGGGCCT...................................................................................................... 33 1 2 2.50 5 5
...................................TGTATCCAGTGTGGCAGTTGCTGTAGCCTC............................................................................................................................................ 30 0 5 1.80 9 9
...................................................................................CACTGTAGAATGTTGGGCCTCTAGGGTTCT............................................................................................ 30 1 2 1.50 3 3
........................................................................TTGGAAACAGCCACTGTAGGATGTTGGGCCT...................................................................................................... 31 2 2 1.50 3 3
.............................TCTGAGTGTATCCAGTGTGGCAGTTGCTGT.................................................................................................................................................. 30 0 4 1.50 6 6
........................................................................TTGGAAACAGCCACTGTAGAATGTTGGGCT....................................................................................................... 30 2 2 1.50 3 3
..........................................................................GGAAACAGCCACTGTAGAATGTTGGGCCTCT.................................................................................................... 31 1 2 1.50 3 3
...............................TGAGTGTATCCAGTGTGGCAGTTGCTGTA................................................................................................................................................. 29 0 4 1.25 5 5
........................................................................TTGGAAACAGCCACTGTAGAATGTTGGGCCTC..................................................................................................... 32 1 2 1.00 2 2
...................................................................................CACTGTAGAATGTTGGGCCTCTAGGGTTCTT........................................................................................... 31 2 2 1.00 2 2
........................................................................TTGGAAGCAACCACTGTAGAATGTTGGGCCT...................................................................................................... 31 3 2 1.00 2 2
................................................................................................................................................................................AGGACATTCGTGGAGAATAGGGAAGAGGC 29 0 2 1.00 2 2
.............................TCTGAGTGTATCCAGTGTGGCAGTTGCTG................................................................................................................................................... 29 0 4 1.00 4 4
........................................................................TTGGAAACAGCCACTGTAGCATGTTGGGCCT...................................................................................................... 31 2 2 1.00 2 2
........................................................................TTGGAAACAGCCACGGGAGAATGTTGGGCCT...................................................................................................... 31 3 2 1.00 2 2
.....................................TATCCAGTGTGGCAGTTGCTGTAGCCTCCTC......................................................................................................................................... 31 0 5 1.00 5 5
....................................................................................ACTGTAGAATGTTGGGCCTCTAGGGTTC............................................................................................. 28 1 2 1.00 2 2
........................................................................TTGGAAACAGCCACTGTAGAATGGTGGGCCT...................................................................................................... 31 1 2 1.00 2 2
........................................................................TTGGAAGCAGCCACTGTAGAATGTTGGGCCT...................................................................................................... 31 2 2 1.00 2 2
......................................................................TCTTGGAAACAGCCACTGTAGAATGTTGGG......................................................................................................... 30 1 2 1.00 2 2
..................................................................TCCCTCTTGGAAACAGCCACTGTAGAATGT............................................................................................................. 30 1 2 1.00 2 2
..........................................................................GGAAACAGCCACTGTAGAATGTTGGGCCTT..................................................................................................... 30 2 2 1.00 2 2
....................................GTATCCAGTGTGGCAGTTGCTGTAGCCTC............................................................................................................................................ 29 0 5 0.80 4 4
......................................ATCCAGTGTGGCAGTTGCTGTAGCCTC............................................................................................................................................ 27 0 5 0.60 3 3
.....................................TATCCAGTGTGGCAGTTGCTGTAGCCTC............................................................................................................................................ 28 0 5 0.60 3 3
.......................TTCACCTCTGAGTGTATCCAGTGTGGCAGT........................................................................................................................................................ 30 1 7 0.57 4 4
......................................................................TCTTGGAAACAGCCACGGTAGAATGTTGGGC........................................................................................................ 31 2 2 0.50 1 1
........................................................................TTGGAAACAGCGACTGTAGAATGTTGGGCCT...................................................................................................... 31 2 2 0.50 1 1
...............................TGAGTGTATCCAGTGTGGCAGTTGCTGT.................................................................................................................................................. 28 0 4 0.50 2 2
............................................................................AAACAGCCACTGTAGAATGTTGGGCCT...................................................................................................... 27 1 2 0.50 1 1
......................................................................TCTTGGAAACAGCCACTGTAGAATGTTGGGACT...................................................................................................... 33 2 2 0.50 1 1
..........................................................................GGAAACAGCCACTGTAGAATGTTGGGCC....................................................................................................... 28 1 2 0.50 1 1
................................................................................AGCCACTGTAGAATGTTGGGC........................................................................................................ 21 1 2 0.50 1 1
......................................................................TCTTGGAAACAGCCACTGTAGAATGTTGGGCC....................................................................................................... 32 1 2 0.50 1 1
...................................................................................CACTGTAGAATGTTGGGCCTCTAAGGTTCT............................................................................................ 30 2 2 0.50 1 1
..................................................................................CCACTGTAGAATGTTGGGCCTCTAGGGTTCT............................................................................................ 31 1 2 0.50 1 1
.......................................................................CTTGGAAACAGCCACTTTAGAATGTTGGGC........................................................................................................ 30 2 2 0.50 1 1
.......................................................................CTTGGAAACAGCCACTGTAGAATGTTGGGC........................................................................................................ 30 1 2 0.50 1 1
................................................................................AGCCACTGTAGAATGTTGGGCCTCTAG.................................................................................................. 27 1 2 0.50 1 1
........................................................................TTGGAAACAGCCACTGTAGAATGTTGGGCGT...................................................................................................... 31 2 2 0.50 1 1
.......................................................................CTTGGAAACAGCCACTGTAGAATGTTGGGT........................................................................................................ 30 2 2 0.50 1 1
...........................................................................GAAACAGCCACTGTAGAATGTTGGGCCT...................................................................................................... 28 1 2 0.50 1 1
........................................................................TTGGAAACAGCCACTATAGAATGTTGGGCC....................................................................................................... 30 2 2 0.50 1 1
........................................................................TTGGAAACAGCCACTGTAGAATG.............................................................................................................. 23 0 2 0.50 1 1
..................................................................TCCCTCTTGGAAACAGCCACTGTAGAATG.............................................................................................................. 29 0 2 0.50 1 1
..................................................................TCCCTCTTGGAAACAGCCAGTGTAGAATGT............................................................................................................. 30 2 2 0.50 1 1
........................................................................ATGGAAACAGCCACTGTAGAATGTTGGGCC....................................................................................................... 30 2 2 0.50 1 1
...................................................................................CACTGTAGAATGTTGGGCCTCTAGGGTTC............................................................................................. 29 1 2 0.50 1 1
...................................................................................CACTGTAGAATGTTGGGCCTCTAGG................................................................................................. 25 1 2 0.50 1 1
......................................................................TCTTAGAAACAGCCACTGTAGAATGTTGGGCCTC..................................................................................................... 34 2 2 0.50 1 1
........................................................................TTGGAAACAACCACTGTAGGATGTTGGGCCT...................................................................................................... 31 3 2 0.50 1 1
......................................................................TCTTGGAAACAGCCACTGTAGAATGTTGGGAC....................................................................................................... 32 2 2 0.50 1 1
........................................................................TTGGAAACAGCCACTGTAGAATGTTGGGCCTTA.................................................................................................... 33 3 2 0.50 1 1
........................................................................TTGGAAACAGCCACTGTAGAATGTTGGGCCTTT.................................................................................................... 33 2 2 0.50 1 1
........................................................................TTGGAAACAGCGACTGTAGAATGTTGGGCC....................................................................................................... 30 2 2 0.50 1 1
.....................................TATCCAGTGTGGCAGTTGCTGTAGCCTCCT.......................................................................................................................................... 30 0 5 0.40 2 2
.....................................TATCCAGTGTGGCAGTTGCTGTAGCCTCT........................................................................................................................................... 29 1 5 0.40 2 2
.......................................TCCAGTGTGGCAGTTGCTGTAGCCTCCTCC........................................................................................................................................ 30 0 5 0.40 2 2
.......................................................CTGTAGCCTCCTCCCTCTTGGAAACAGC.......................................................................................................................... 28 0 8 0.38 3 3
........................................................................................TAGAATGTTGGGCCTCTAGGGTTCTCTGTCT...................................................................................... 31 2 3 0.33 1 1
......................................................................................TGTAGAATGTTGGGCCTCTAGGGTTCTCT.......................................................................................... 29 1 3 0.33 1 1
.......................................................................................GTAGAATGTTGGGCCTCTAGGGTTC............................................................................................. 25 1 3 0.33 1 1
......................................................................................TGTAGAATGTTGGGCCTCTAGGGTTCTC........................................................................................... 28 1 3 0.33 1 1
........................................................................................TAGAATGTTGGGCCTCTAGGGTT.............................................................................................. 23 1 3 0.33 1 1
........................................................................................TAGAATGTTGGGCCTCTAGGGTTGTCTGTCT...................................................................................... 31 3 3 0.33 1 1
...............................TGAGTGTATCCAGTGTGGCAGTTGCTG................................................................................................................................................... 27 0 4 0.25 1 1
..........................................................................................................................................................................AAGAGGAGGACATTCGTGGAGAATAGT........ 27 1 4 0.25 1 1
...........................................................................................................GGTTCTCTGTCGGCCATGGTTGGGT......................................................................... 25 1 4 0.25 1 1
.......................................TCCAGTGTGGCAGTTGCTGTAGCCTCCTC......................................................................................................................................... 29 0 5 0.20 1 1
......................................ATCCAGTGTGGCAGTTGCTGTAGCCTCCTC......................................................................................................................................... 30 0 5 0.20 1 1
.....................................TATCCAGTGTGGCAGTTGCTGTAGCCTCCTT......................................................................................................................................... 31 1 5 0.20 1 1
......................................ATCCAGTGTGGCAGTTGCTGTAGCCTCT........................................................................................................................................... 28 1 5 0.20 1 1
.......................................TCCAGTGTGGCAGTTGCTGTAGCCTCCTCCT....................................................................................................................................... 31 1 5 0.20 1 1
........................................CCAGTGTGGCAGTTGCTGTAGCCTCCTCCT....................................................................................................................................... 30 1 5 0.20 1 1
.................................AGTGTATCCAGTGTGGCAGTTGCTGTA................................................................................................................................................. 27 0 5 0.20 1 1
.......................................TCCAGTGTGGCAGTTGCTGTAGCCTCC........................................................................................................................................... 27 0 5 0.20 1 1
...............................................................TCCTCCCTCTTGGAAACAGCCACTGTAGAAA............................................................................................................... 31 1 6 0.17 1 1
................................................................................................................................................................TAGTGAGAGAAAGAGGAGGACATTCGTGG................ 29 0 6 0.17 1 1
........................................................................................................TAGGGTTCTCTGTCGGCCATGGTTGT........................................................................... 26 0 6 0.17 1 1
..................................................................TCCCTCTTGGAAACAGCCACTGTAGAA................................................................................................................ 27 0 6 0.17 1 1
......................................................................................................TCTAGGGTTCTCTGTCGGCCATGGTTGTG.......................................................................... 29 0 6 0.17 1 1
...............................................................TCCTCCCTCTTGGAAACAGCCACTGTAGAA................................................................................................................ 30 0 6 0.17 1 1
................................................................................................................................................................TAGTGAGAGAAAGAGGAGGACATTCGT.................. 27 0 6 0.17 1 1
...............................................................TCCTCCCTCTTGGAAATAGCCACTGTAGAA................................................................................................................ 30 1 6 0.17 1 1
......................................................................TCTTGGAAACAGCCACTGTAGAAGGTTGGGCC....................................................................................................... 32 2 7 0.14 1 1
........................................................................TTGGAAACAGCCACTGTAGAAAGTTGGGCCT...................................................................................................... 31 2 7 0.14 1 1
........................................................................TTGGAAACAGCCACTGTAGAAAGTTGGGCC....................................................................................................... 30 2 7 0.14 1 1
........................................................................TTGGAAACAGCCACTGTAGAAGGTTGGGCC....................................................................................................... 30 2 7 0.14 1 1

Anti-sense strand reads

CGTAAGCCCCAGGAGGGGAAAGGAAGAGGAGACTCACATAGGTCACACCGTCAACGACATCGGAGGAGGGAGAACCTTTGTCGGTGACATCTTACTACCCGGAGATCCCAAGAGACAGCCGGTACCAACACAAGTTCCGGCTCGTTGTACGTCTCCTCTTATCACTCTCTTTCTCCTCCTGTAAGCACCTCTTATCCCTTCTCCG

************************************************************........(((..(((((((.(((((((..((.((..((.((((((...))))))))..)).))..))))))).)))))))..)))..********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..........AGGAGGGGAAAGGAAGAGGGGACTCACAT...................................................................................................................................................................... 29 1 5 0.60 3 3
.....................GGAAGAGGAGACTCACATAGGTCACAC............................................................................................................................................................. 27 0 7 0.29 2 2
CGTAAGCCCCAGGAGGGGAAAGGAAGTGGAGAC............................................................................................................................................................................ 33 1 5 0.20 1 1

Generated: 09/01/2015 at 11:43 AM