ID:

eca-mir-9147

 Coordinate:

chr15:15528276-15528396 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-56.7 -56.6 -56.4 -56.4
mature

  1. chr1:11091329-11091345 +
  2. chr3:32220777-32220793 +
  3. chr5:27815632-27815648 +
  4. chr7:50025049-50025065 +
  5. chr10:10999113-10999129 +
  6. chr10:15348951-15348967 +
  7. chr12:20818559-20818575 +
  8. eca-mir-9147  chr15:15528353-15528369 +
  9. chr16:59186251-59186267 +
  10. chr17:5471298-5471314 +
  11. chr18:41070932-41070948 +
  12. chr18:76819062-76819078 +
  13. chr21:27833910-27833926 +
  14. chr21:32706821-32706837 +
  15. chr25:14991020-14991036 +
  16. chr26:25394262-25394278 +
  17. chr28:5704263-5704279 +
  18. chr29:30472196-30472212 +
  19. chr30:28286494-28286510 +
  20. chrX:122757916-122757932 +
star

Sense Strand Reads

AATAGGACTAACTAAAATGGCTATAACCCGTATTGAGTGAAAAATAACAATGACAgggaccggcgctgtggccaagtagttaggtttgcgccctctgctttggaggcccagggttttgccggttcagatcctgggcgcggacctagcaccgctcatcaggccatgctagggcagcatcccacatgccacagctaaaaggacccaccaaaaaaaaAAGAAAA

***********************************.((.................((((...((.((((((((..((.(((((((((((((((((((..((((.((((...))))...))))..))))....))))))))))))))))).........))))))...)).))....))))....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................TATTGAGTGAAAAATAACAATGACAGGGA.................................................................................................................................................................. 29 0 1 1.00 1 1
................................................................................................................................................................................................AAAAAGGACCCTCCAAAAAAAAAAAA... 26 3 11 0.09 1 1
...............................................................................................................................ATCCTGGGCGCGGACCT............................................................................. 17 0 20 0.05 1 1
.........................................................................................................................GTTCAGATCCTGGGCGCGGACCT............................................................................. 23 0 20 0.05 1 1

Anti-sense strand reads

TTATCCTGATTGATTTTACCGATATTGGGCATAACTCACTTTTTATTGTTACTGTgggTGGggGgGtgtggGGTTgtTgttTggtttgGgGGGtGtgGtttggTggGGGTgggttttgGGggttGTgTtGGtgggGgGggTGGtTgGTGGgGtGTtGTggGGTtgGtTgggGTgGTtGGGTGTtgGGTGTgGtTTTTggTGGGTGGTTTTTTTTTTCTTTT

***********************************.((.................((((...((.((((((((..((.(((((((((((((((((((..((((.((((...))))...))))..))))....))))))))))))))))).........))))))...)).))....))))....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................GTCCCTGGCAGCGACACC...................................................................................................................................................... 18 1 2 0.50 1 1
.......................................................................................................TCCGGGTCCCAAAACGGCCAAGTCTAGTACCC...................................................................................... 32 1 5 0.20 1 1

Generated: 09/01/2015 at 11:43 AM