ID:

eca-mir-9134

 Coordinate:

chr13:6080527-6080641 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.6 -30.6 -30.0 -30.0

Sense Strand Reads

ttccccagctccatgcacccagggtcctggaagcagcagcaccctgaacaggatgcacgcccagcgccagatcttggattgtaagaccgctctctgccgaaggaaccagggcccctcgaagggatggctgactccaggccggggctgggagagcccaaggtgagcctcgaccgtcttgtgtcggaaagtaaggcactgctgcagagcagtggggc

***************************************************************..........((((...........((((((...........((..((((((..........((((.......))))))))))))))))))))))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGGA............................................................................................................... 26 0 1 12.00 12 12
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGGAAC............................................................................................................. 28 0 1 12.00 12 12
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGGAACC............................................................................................................ 29 0 1 10.00 10 10
...........................................................CCCAGCGCCAGATCTTGGATTGTAAGACCGC............................................................................................................................. 31 0 1 9.00 9 9
.......................................................................TCTTGGATTGTAAGACCGCTCTCTGCCT.................................................................................................................... 28 1 1 8.00 8 8
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGGAA.............................................................................................................. 27 0 1 7.00 7 7
............................................................CCAGCGCCAGATCTTGGATTGTAAGACCGC............................................................................................................................. 30 0 1 7.00 7 7
.........................................................................TTGGATTGTAAGACCGCTCTCTGCC..................................................................................................................... 25 0 1 5.00 5 5
.......................................................................TCTTGGATTGTAAGACCGCTCTCTGCC..................................................................................................................... 27 0 1 4.00 4 4
............................................................CCAGCGCCAGATCTTGGATTGTAAGAC................................................................................................................................ 27 0 1 3.00 3 3
.........................................................................TTGGATTGTAAGACCGCTCTCTGCCT.................................................................................................................... 26 1 1 3.00 3 3
............................................TGAACAGGATGCACGCCCAGCGCCAGATC.............................................................................................................................................. 29 0 1 3.00 3 3
.........................................................CGCCCAGCGCCAGATCTTGGATTGTAAGAC................................................................................................................................ 30 0 1 3.00 3 3
.................................................................................TAAGACCGCTCTCTGCCGAAGGAAC............................................................................................................. 25 0 1 2.00 2 2
..........................................................................TGGATTGTAAGACCGCTCTCTGCCG.................................................................................................................... 25 0 1 2.00 2 2
...............................................................................TGTAAGACCGCTCTCTGCCGAAGGAACC............................................................................................................ 28 0 1 2.00 2 2
.........................................................................TTGGATTGTAAGACCGCTCTCTGCCGAAGG................................................................................................................ 30 0 1 2.00 2 2
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGG................................................................................................................ 25 0 1 2.00 2 2
..........................................................................TGGATTGTAAGACCGCTCTCTGCC..................................................................................................................... 24 0 1 2.00 2 2
..........................................................GCCCAGCGCCAGATCTTGGATTGTAAGACC............................................................................................................................... 30 0 1 2.00 2 2
................................................................................................................................................................TGAGCCTCGACCGTCTTGTGTCGGAAAGT.......................... 29 0 1 2.00 2 2
...............................................................................TGTAAGACCGCTCTCTGCCGAAGGA............................................................................................................... 25 0 1 2.00 2 2
................................................................CGCCAGATCTTGGATTGTAAGACCGCTC........................................................................................................................... 28 0 1 2.00 2 2
.........................................................................TTGGATTGTAAGACCGCTCTCTGCCG.................................................................................................................... 26 0 1 2.00 2 2
.........................................................................TTGGATTGTAAGACCGCTCTCTGCCGAAGGT............................................................................................................... 31 1 1 2.00 2 2
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGGAACTTT.......................................................................................................... 31 3 1 2.00 2 2
.........................................................................TTGGATTGTAAGACCGCTCTCTGCCGAAG................................................................................................................. 29 0 1 2.00 2 2
..................................................................CCAGATCTTGGATTGTAAGACCGCTC........................................................................................................................... 26 0 1 1.00 1 1
..........................................................................TGGATTGTAAGACCGCTCTCTGCCGAAGGC............................................................................................................... 30 1 1 1.00 1 1
..................................................................................AAGACCGCTCTCTGCCGAAGGAACCA........................................................................................................... 26 0 1 1.00 1 1
...................................................................................................................TCGAAGGGATGGCTGACTCCAGGCAT.......................................................................... 26 2 1 1.00 1 1
................................................................CGCCAGATCTTGGATTGTAAGACC............................................................................................................................... 24 0 1 1.00 1 1
..........................................................GCCCAGCGCCAGATCTTGGATTGTAAGAC................................................................................................................................ 29 0 1 1.00 1 1
............................................TGAACAGGATGCACGCCCAGCGCCAGAT............................................................................................................................................... 28 0 1 1.00 1 1
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGGAATT............................................................................................................ 29 2 1 1.00 1 1
...........................................................CCCAGCGCCAGATCTTGGATTGTAAGAC................................................................................................................................ 28 0 1 1.00 1 1
.........................................................................TTGGATTGTAAGACCGCTCTCTGC...................................................................................................................... 24 0 1 1.00 1 1
........................................................................CTTGGATTGTAAGACCGCTCTCTGCCG.................................................................................................................... 27 0 1 1.00 1 1
................................................................CGCCAGATCTTGGATTGTAAGACCGCT............................................................................................................................ 27 0 1 1.00 1 1
............................................................................................TCTGCCGAAGGAACCAGGGCCCCTCGAA............................................................................................... 28 0 1 1.00 1 1
..........................................................................................................................................................CCAAGGTGAGCCTCGACCGTCTTGTGTCGGTTT............................ 33 3 1 1.00 1 1
...................................................................................................................TCGAAGGGATGGCTGACTCCATT............................................................................. 23 2 1 1.00 1 1
............................................................................GATTGTAAGACCGCTCTCTGCCGAAG................................................................................................................. 26 0 1 1.00 1 1
.......................................................................TCTTGGATTGTAAGACCGCTCTCTGCCGATT................................................................................................................. 31 2 1 1.00 1 1
.........................................................................TTGGATTGTAAGACCGCTCTCTGCCGAAGT................................................................................................................ 30 1 1 1.00 1 1
...................................................................CAGATCTTGGATTGTAAGACCGCTCTCTGCC..................................................................................................................... 31 0 1 1.00 1 1
................................................................CGCCAGATCTTGGATTGTAAGACCGCTCT.......................................................................................................................... 29 0 1 1.00 1 1
...........................................................CCCAGCGCCAGATCTTGGATTGTAAGACC............................................................................................................................... 29 0 1 1.00 1 1
..........................CTGGAAGCAGCAGCACCCTGAACAGGAT................................................................................................................................................................. 28 0 1 1.00 1 1
............................................................CCAGCGCCAGATCTTGGATAGTAAGACCGC............................................................................................................................. 30 1 1 1.00 1 1
...................................................................................................................TCGAAGGGATGGCTGACTCCAGGCCGGG........................................................................ 28 0 1 1.00 1 1
..............................................................................TTGTAAGACCGCGCTCTGCCGAAGGAAC............................................................................................................. 28 1 1 1.00 1 1
............................................TGAACAGGATGCACGCCCAGCGCCAGA................................................................................................................................................ 27 0 1 1.00 1 1
........................TCCTGGAAGCAGCAGCACCCTGAACAGGAT................................................................................................................................................................. 30 0 1 1.00 1 1
.....................................................TGCACGCCCAGCGCCAGATCTTGGATT....................................................................................................................................... 27 0 1 1.00 1 1
..............................................................................TTGTAAGACCGATCTCTGCCGAAGGAACC............................................................................................................ 29 1 1 1.00 1 1
...................................................................................................................TCGAAGGGATGGCTGACTCCAGGCCGG......................................................................... 27 0 1 1.00 1 1
...................................................................................................................TCGAAGGGATGGCTGACTCCAGGCC........................................................................... 25 0 1 1.00 1 1
...........................................................................................................................................................CAAGGTGAGCCTCGACCGTCTTGTGTCT................................ 28 1 1 1.00 1 1
..........................................................GCCCAGCGCCAGATCTTGGATTGTAAGACCGC............................................................................................................................. 32 0 1 1.00 1 1
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGGAACT............................................................................................................ 29 1 1 1.00 1 1
................................................................................................................................................................................TGTGTCGGAAAGTAAGGCACTGCTGCAGAGCAGTGGTT. 38 2 1 1.00 1 1
...........................TGGAAGCAGCAGCACCCTGAACAGGAA................................................................................................................................................................. 27 1 1 1.00 1 1
...............................................................................................................................................................................TTGTGTCGGAAAGTAAGGCACTGCTGCAGA.......... 30 0 1 1.00 1 1
...............................................................................TGTAAGACCGCTCTCTGCCGAAGGAAC............................................................................................................. 27 0 1 1.00 1 1
............................................TGAACAGGAAGCACGCCCAACGCCAGA................................................................................................................................................ 27 2 1 1.00 1 1
..........................................................................................TCTCTGCCGAAGGAACCAGGGCCCC.................................................................................................... 25 0 1 1.00 1 1
.........................................................................TTGGATTGTAAGACCGCTCTCTGCCA.................................................................................................................... 26 1 1 1.00 1 1
............................................................................................................................................................AAGGTGAGCCTCGACCGTCTTGTGTCGGA.............................. 29 0 1 1.00 1 1
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGGAT.............................................................................................................. 27 1 1 1.00 1 1
.................................................................................TAAGACCGCTCTCTGCCGAAGGAACCAGGGAT...................................................................................................... 32 2 1 1.00 1 1
........................TCCTGGAAGCAGCAGCACCCTGAACAGGA.................................................................................................................................................................. 29 0 1 1.00 1 1
........................................................................CTTGGATTGTAAGACCGCTCTCTGCC..................................................................................................................... 26 0 1 1.00 1 1
...............................................................................................................................................................................TTGTGTCGGAAAGTAAGGCACTGCT............... 25 0 1 1.00 1 1
...................................................................................................................TCGAAGGGATGGCTGACTCCAGGCCGGGGTT..................................................................... 31 1 1 1.00 1 1
.......................................................................TCTTGGATTGTAAGACCGCTCTCTGCCGAA.................................................................................................................. 30 0 1 1.00 1 1
...........................................................CCCAGCGCCAGATCTTGGATTGTAAGATTT.............................................................................................................................. 30 3 1 1.00 1 1
.....................................................................................................................................................................................CGGAAAGTAAGGCACTGCTGCAGAGA........ 26 1 1 1.00 1 1
...............................................................................................................................................................................TTGTGTCGGAAAGTAAGGCACTGCTGCT............ 28 1 1 1.00 1 1
.................................................................GCCAGATCTTGGATTGTAAGACCGCTCTC......................................................................................................................... 29 0 1 1.00 1 1
.....................................................................................................................................................................CTCGACCGTCTTGTGTCGGAAAGTAAGGC..................... 29 0 1 1.00 1 1
.........................................................CGCCCAGCGCCAGATCTTGGATTGTAAA.................................................................................................................................. 28 1 1 1.00 1 1
.................................................................................TAAGACCGCTCTCTGCCGAAGGAACCAGGGC....................................................................................................... 31 0 1 1.00 1 1
.............................................................................................................................................................................TCTTGTGTCGGAAAGTAAGGCACTGCTGCA............ 30 0 1 1.00 1 1
..............................................................................TTGTAAAACCGCTCTCTGCAGAAGGAAC............................................................................................................. 28 2 1 1.00 1 1
..........................................................................TGGATTGTAAGACCGCTCTCTGCCA.................................................................................................................... 25 1 1 1.00 1 1
...........................TGGAAGCAGAAGCACCCTGGACAGGATA................................................................................................................................................................ 28 3 1 1.00 1 1
..........................................................................TGGATTGTAAGACCGCTCTCTGCCGT................................................................................................................... 26 1 1 1.00 1 1
.................................................................................TAAGACCGCTCGCTGCCGAAGGAACCAGGGAT...................................................................................................... 32 3 1 1.00 1 1
......................................................................................................................................................GAGCCCAAGGTGAGCCTCGACCGTCTT...................................... 27 0 1 1.00 1 1
.............................................................................................................................................................................TCTTGTGTCGGAAAGTGAGGCACTGCT............... 27 1 1 1.00 1 1
..............................................................................TTGTAAGACCGCTCTCTGCCGAAGGAAT............................................................................................................. 28 1 1 1.00 1 1
....................................................................................................................................................................................TCGGAAAGTAAGGCAC................... 16 0 2 0.50 1 1

Anti-sense strand reads

ttGGGGTgGtGGTtgGTGGGTgggtGGtggTTgGTgGTgGTGGGtgTTGTggTtgGTGgGGGTgGgGGTgTtGttggTttgtTTgTGGgGtGtGtgGGgTTggTTGGTgggGGGGtGgTTgggTtggGtgTGtGGTggGGggggGtgggTgTgGGGTTggtgTgGGtGgTGGgtGttgtgtGggTTTgtTTggGTGtgGtgGTgTgGTgtggggG

*********************************************************..........((((...........((((((...........((..((((((..........((((.......))))))))))))))))))))))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:38 AM