ID:

eca-mir-9132

 Coordinate:

chr13:2514351-2514485 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.0 -37.6 -37.6

Sense Strand Reads

GGGCTCCAGTGAAACCTGAGGTGAGGGAGACGTGGATGCCAGCGCCCGTGGTCCAGTCGCCTCGGCCCGAGTCCCCTCCGCCTTTGACAGGACACAGCTGGGGTTGTGCGGGAGGGGCTCAGCCCTCATAATGGTCAGTGGTCTCGTCTGTGCTGGGGGCGCGGGATTCTAACGAGAAGTGTCTGAGGTCCCCTGGGCATAAGGAACGGATGCCCACAGAAATGTAGAAACTGCA

*********************************************************************((((((...((((((((((.((((.((.((((.((((((.....(((((...)))))))))))..)))))))))).)))......))))))).)))))).****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGT....................................... 27 1 1 12.00 12 12
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGGGT..................................... 29 1 1 8.00 8 8
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGGGC..................................... 29 0 1 7.00 7 7
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGGAA..................................... 29 2 1 4.00 4 4
.......................................................................................................................................................................................................TAAGGAACGGATGCCCACAGAAATGTAG........ 28 0 1 4.00 4 4
......................................................................................................................................................................TTCTAACGAGAAGTGTCTGAGGTCCCCTGT....................................... 30 1 1 3.00 3 3
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTG........................................ 26 0 1 3.00 3 3
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGG....................................... 27 0 1 3.00 3 3
....................................................................................TGACAGGACACAGCTGGGGTTGTGCGGGA.......................................................................................................................... 29 0 1 2.00 2 2
............................................................................................................................................................................................................AACGGATGCCCACAGAAATGTAGAAACTGC. 30 0 1 2.00 2 2
..................................................................................................................................................................................................................TGCCCACAGAAATGTAGAAACTGCA 25 0 1 2.00 2 2
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGGGCTATA................................. 33 3 1 2.00 2 2
.......................................................................................................................................................................................................TAAGGAACGGATGCCCACAGAAATGTAGAA...... 30 0 1 2.00 2 2
............................................................................................................................................................................CGAGAAGTGTCTGAGGTCCCCTGGGCATAAG................................ 31 0 1 2.00 2 2
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGGG...................................... 28 0 1 2.00 2 2
.......................................................................................................................................................................TCTAACGAGAAGTGTCTGAGGTCC............................................ 24 0 1 2.00 2 2
.........................................................................................................................................................................TAACGAGAAGTATCTGAGGTCCCCTGAA...................................... 28 3 1 1.00 1 1
......................................................................................................................................................................TTCTAACGAGAAGTGTCTGAGGTCA............................................ 25 1 1 1.00 1 1
.............................................................................................................................................................GGCGCGGGATTCTAACGAGAAGTGTCTGAG................................................ 30 0 1 1.00 1 1
......................................................................................................................................................................TTCTAACGAGAAGTGTGTGAGGTCCCCTGT....................................... 30 2 1 1.00 1 1
.......................................................................................................................................................................................................TAAGGAACGGATGCCCACAGAAATGT.......... 26 0 1 1.00 1 1
....................................................................................................................................................................GATTCTAACGAGAAGTGTCTGAGGTC............................................. 26 0 1 1.00 1 1
......................................................................................................................................................................TTCTAACGAGAAGTGTCTGAGGTCCCC.......................................... 27 0 1 1.00 1 1
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGGGCAT................................... 31 0 1 1.00 1 1
.........TGAAACCTGAGGTGAGGGAGACGTGGATG..................................................................................................................................................................................................... 29 0 1 1.00 1 1
.......................................................................................................................................................................................................TAAGGAACGGATGCCCACAGAAATGTAA........ 28 1 1 1.00 1 1
........................................................................................................................................................................................................AAGGAACGGATGCCCACAGAAATGTAGAATTTT.. 33 3 1 1.00 1 1
.............................................................................................................................TCATAATGGTCAGTGGTCTCGCCTGT.................................................................................... 26 1 1 1.00 1 1
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGGGCTT................................... 31 1 1 1.00 1 1
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCT............................................ 22 1 1 1.00 1 1
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGGT...................................... 28 1 1 1.00 1 1
..............................................................................................................................................................................................................CGGATGCCCACAGAAATGTAGAAACTGCA 29 0 1 1.00 1 1
............................................................................TCCACCTTTGACAGGACACAGCTGGGGTTG................................................................................................................................. 30 1 1 1.00 1 1
.............................................................................................................................TCATAATGGTCAGTGGTCTCGTCTGTGCT................................................................................. 29 0 1 1.00 1 1
..........................................................................................................................................................................................................GGAACGGATGCCCACAGAAATGTAGAAAC.... 29 0 1 1.00 1 1
.........TGAAACCTGAGGTGAGGGAGAAGTGGATG..................................................................................................................................................................................................... 29 1 1 1.00 1 1
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGTA...................................... 28 2 1 1.00 1 1
.................................................................................................................................................................CGGGATTCTAACGAGAAGTGTCTGAGGTCC............................................ 30 0 1 1.00 1 1
......................................................................................................................................................................TTCTAACGAGAAGTGTCTGAGGTCCCCTGG....................................... 30 0 1 1.00 1 1
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCT......................................... 25 0 1 1.00 1 1
.............................................................................................................................TCATAATGGTCAGTGGTCTCGCCTGTGCT................................................................................. 29 1 1 1.00 1 1
.............................................................................................................................TCATAATGGTCAGTGGTCTCGCCT...................................................................................... 24 1 1 1.00 1 1
...........................................................................................................................................................................................................GAACGGATGCCCACAGAAATGTAGAAACTGT. 31 1 1 1.00 1 1
.........................................................................................................................................................................TAACGAGAAGTGGCTGAGGTCCCCTGT....................................... 27 2 1 1.00 1 1
.......................................................................................................................................................................................................TAAGGAACGGATGCCCACAGAAATGTT......... 27 1 1 1.00 1 1
.........................................................................................................................................................................TAACGAGAAGTGTCTGAGGTCCCCTGAA...................................... 28 2 1 1.00 1 1
......................................................................................................................................................................TTCTAACGAGAGGTGTCTGAGGTCCCCTGGT...................................... 31 2 1 1.00 1 1
.......................................................................................................................................................................................................TAAGGAACGGATGCCCACAGAAATGTAGT....... 29 1 1 1.00 1 1
.......................................................................................................................................................................TCTAACGAGAAGTGTCTGAGGTCCCCTGG....................................... 29 0 1 1.00 1 1
.........TGAGACCTGAGGTGAGGGAGACGTGGATGC.................................................................................................................................................................................................... 30 1 1 1.00 1 1
......................................................................................................................................................................TTCTAACGAGAAGTGTCTGAGGTCC............................................ 25 0 1 1.00 1 1
.....................................................................................................................................................................ATTCTAACGAGAAGTGTCTGAGGTCCCCTG........................................ 30 0 1 1.00 1 1
......................................................................................................................................................................TTCTAACGAGAAGTGTCTGAGGTCCCCTGGT...................................... 31 1 1 1.00 1 1
..................................................................................TTTGACAGGACACAGC......................................................................................................................................... 16 0 8 0.13 1 1

Anti-sense strand reads

CCCGAGGTCACTTTGGACTCCACTCCCTCTGCACCTACGGTCGCGGGCACCAGGTCAGCGGAGCCGGGCTCAGGGGAGGCGGAAACTGTCCTGTGTCGACCCCAACACGCCCTCCCCGAGTCGGGAGTATTACCAGTCACCAGAGCAGACACGACCCCCGCGCCCTAAGATTGCTCTTCACAGACTCCAGGGGACCCGTATTCCTTGCCTACGGGTGTCTTTACATCTTTGACGT

******************************************************************((((((...((((((((((.((((.((.((((.((((((.....(((((...)))))))))))..)))))))))).)))......))))))).)))))).********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:38 AM