ID:

eca-mir-9131

Coordinate:

chr13:6025123-6025251 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.3 -45.9 -45.8 -45.8

Sense Strand Reads

GGAAATTGGACATGTGGGAAGGAGGTGGGCGTGGCCCGGAGCCGCAGAGCCAGGTGCCTTCTGTTGGCGACTGAGCAGGACTGTGTGTGACCTTTGCCTTCCCTCCAGTTATTGCTGGGGCCTGGAGGCGGTAACTGACGGTCCACGCCCGGCCCCAGCTCTGCATGGACCACTAGTAATAAAGGAGGTGGGGAGCGGCTGTGTGGCTGATCTAATGAGGGCCCAGCTG

**********************************************..((..............(((...(((.((.(((((((..((.(((...((((((.(((((((....)))))))...))))))))).))..)))))))..)).)))..)))))**********************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................TGTTGGCGACTGAGCAGGACTGTGTGT............................................................................................................................................. 27 0 1 2.00 2 2
......................................................................................................................................................................................................CTGTGTGGCTGATCTAATGAGGGATT..... 26 3 1 1.00 1 1
..........................................................................GCAGGACTGTGTGTGACCTTTGCCT.................................................................................................................................. 25 0 1 1.00 1 1
...........................................................................................................................................................CAGCTCTGCATGGACCACTAGTAATAAAG............................................. 29 0 1 1.00 1 1
.............................................................TGTTGGCGACTGAGCAGGACTGT................................................................................................................................................. 23 0 1 1.00 1 1
........................................................................GAGCAGGACTGTGTGTGACCTTTGCCT.................................................................................................................................. 27 0 1 1.00 1 1
.............................................................TGTTGGCGACTGAGCAGGACTGTGTTT............................................................................................................................................. 27 1 1 1.00 1 1
..........................................................................................................................TGGAGGCGGTAACTGACGGTCC..................................................................................... 22 0 1 1.00 1 1

Anti-sense strand reads

CCTTTAACCTGTACACCCTTCCTCCACCCGCACCGGGCCTCGGCGTCTCGGTCCACGGAAGACAACCGCTGACTCGTCCTGACACACACTGGAAACGGAAGGGAGGTCAATAACGACCCCGGACCTCCGCCATTGACTGCCAGGTGCGGGCCGGGGTCGAGACGTACCTGGTGATCATTATTTCCTCCACCCCTCGCCGACACACCGACTAGATTACTCCCGGGTCGAC

**********************************************************************..((..............(((...(((.((.(((((((..((.(((...((((((.(((((((....)))))))...))))))))).))..)))))))..)).)))..)))))**********************************************
Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................GCCTCGGCGTGTCGGCCCAC............................................................................................................................................................................. 20 2 10 0.20 2 2

Generated: 09/01/2015 at 11:38 AM