ID:

eca-mir-9128-2

 Coordinate:

chr13:26880997-26881091 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-63.2 -63.1 -63.0
mature

  1. eca-mir-9128-2  chr13:25353685-25353712 +
  2. eca-mir-9128-2  chr13:26829972-26829999 +
  3. eca-mir-9128-2  chr13:26881042-26881069 +
  4. eca-mir-9128-1  chr13:26883763-26883790 +
star

Sense Strand Reads

cTGGAGTGGTCTGGCCCTGCTGCCGCTCCCCTGGCACCTGGCGGAGGGGAGGGAGCCGGGTGGGGTGCTGGGCCCTGCTTCCGTGGGTTTCAGCTCTCGTTGGTGCTGGTGCTCGCGTGGGCCACGTCACCCTCCCTTCACCCTTGTATCGCGCAGGTGAGCGTGCGGTCCGGCGGGCCGGCCGCGTGGCGAGGA

***********************************(((((((((((((((((((...((((((.((....(((((......(((((((.(((((.((....)).))))).))))))).))))))).)))))))))).)).)))))....))).)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................................................CTCGTTGGTGCTGGTGCTCGCGTGGGCC........................................................................ 28 0 4 1.00 4 4
...............................................................................................CTCGTTGGTGCTGGTGCTCGCGTGGGCCA....................................................................... 29 0 4 0.75 3 3
...................................................................................................................................................ATCGCGCAGGTGAGCGTGCGGTCCGGC..................... 27 0 3 0.67 2 2
......................................................................................................................................................GGCAAGGTGAGCGTGCGGTCCGGCGGGC................. 28 3 4 0.50 2 2
....................................................................................................................................TCCCTTCACCCTTGTATCGCGCAGGTG.................................... 27 0 3 0.33 1 1
..........................................................................................................................................CACCCTTGTATCGCGCAGGTGAGCGTGC............................. 28 0 3 0.33 1 1
..........................................................................................................................................CACCCTTGTATCGCGCAGGTGAGCGTG.............................. 27 0 3 0.33 1 1
....................................................................................................................................................TCGCGCAGGTGAGCGTGCGGTCCGGC..................... 26 0 3 0.33 1 1
....................................................................................................................................TCCCTTCACCCTTGTATCGCGCAGG...................................... 25 0 3 0.33 1 1
...........................................................................................................................................ACCCTTGTATCGCGCAGGTGAGCGTGCGGT.......................... 30 0 3 0.33 1 1
.............................................................................................................................................................TGAGCGTGCGGTCCGGCGGGCCG............... 23 0 3 0.33 1 1
...............................................................................TCCGTGGGTTTCAGCTCTCGTTGGTGCTG....................................................................................... 29 0 4 0.25 1 1
.......................................................................................................................................................GCAAGGTGAGCGTGCGGTCCGGCGG................... 25 3 4 0.25 1 1
...........................................................................TCCTTCCGTGGGTTTCAGCTCTCGTTGGTG.......................................................................................... 30 1 4 0.25 1 1
..............................................................................................TCTCGTTGGTGCTGGTGCTCGCGTGGGCC........................................................................ 29 0 4 0.25 1 1
.............................................................................CTTCCGTGGGTTTCGGCTC................................................................................................... 19 1 4 0.25 1 1
.............................................................................................CTCTCGTTGGTGCTGGTGCTCGCGTGGGCC........................................................................ 30 0 4 0.25 1 1
........................................................................................TTCAGCTCTCGTTGGTGCT........................................................................................ 19 0 8 0.25 2 2
.................TGCTGCCGCTCCCCTGGCACCTGGCGGA...................................................................................................................................................... 28 0 4 0.25 1 1
.........................................................................................................CTGGTGCTCGCGTGGGCCACGTCAAC................................................................ 26 1 4 0.25 1 1
..............................................................................TTCCGTGGGTTTCAGCTCT.................................................................................................. 19 0 4 0.25 1 1
.........................................................................................................CTGGTGCTCGCGTGGGCCACGTCACCC............................................................... 27 0 4 0.25 1 1
...............................................................................................CTCGTTGGTGCTGGTGCTCGCGTGGGCCT....................................................................... 29 1 4 0.25 1 1
...........................................................................TGCTTCCGTGGGTTTCAGCTCTCGTTGGTG.......................................................................................... 30 0 4 0.25 1 1
.........................................................................................................CTGGTGCTCGCGTGGGCCACGAAA.................................................................. 24 2 4 0.25 1 1
....................................................................................................TGGTGCTGGAGCTCGCGTGGGCCACGTC................................................................... 28 1 5 0.20 1 1
..................................................................................GTGGGTTTCAGCTCTCGTTGGTGCT........................................................................................ 25 0 6 0.17 1 1
...........................................................................................AGCTCTCGTTGGTGCTGGTGCTCGC............................................................................... 25 0 6 0.17 1 1
.......................................................................................TTTCAGCTCTCGTTGGTGCTGGTGCT.................................................................................. 26 0 7 0.14 1 1
......................................................................................GTTTCGGCTCTCGTTGGTG.......................................................................................... 19 1 7 0.14 1 1
........................................................................................TTCAGCTCTCGTTGGTG.......................................................................................... 17 0 8 0.13 1 1
....................................................................................................................................................................GCGGTCCGGCGCGCCG............... 16 1 16 0.13 2 2
.......................................................................................TTTCAGCTCTCGTTGGTG.......................................................................................... 18 0 8 0.13 1 1
.........................................................................................TCAGCTCTCGTTGGTGC......................................................................................... 17 0 9 0.11 1 1
.....................................................................................................................................................................CGGTCCGGCGCGCCG............... 15 1 20 0.05 1 1

Anti-sense strand reads

GACCTCACCAGACCGGGACGACGGCGAGGGGACCGTGGACCGCCTCCCCTCCCTCGGCCCACCCCACGACCCGGGACGAAGGCACCCAAAGTCGAGAGCAACCACGACCACGAGCGCACCCGGTGCAGTGGGAGGGAAGTGGGAACATAGCGCGTCCACTCGCACGCCAGGCCGCCCGGCCGGCGCACCGCTCCT

***********************************(((((((((((((((((((...((((((.((....(((((......(((((((.(((((.((....)).))))).))))))).))))))).)))))))))).)).)))))....))).)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................................CGAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 29 0 4 4.00 16 16
......................................................................................................................................................................CCAGGCCGCCCGGCCGGCGTACCGCTCCT 29 1 3 3.67 11 11
...........................................................................ACGAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 30 0 4 3.50 14 14
.....................................................................................................................................................................GCCAGGCCGCCCGGCCGGCGTACCGCTCCT 30 1 3 3.33 10 10
......................................................................................................................TCCGGTGCAGTGGGAGGGAAGTGGGAACAT............................................... 30 1 6 2.50 15 15
.......................................................................................................................CCGGTGCAGTGGGAGGGAAGTGGGAACAT............................................... 29 0 6 2.33 14 14
......................................................................................................................................................................TCAGGCCGCCCGGCCGGCGTACCGCTCCT 29 2 3 2.00 6 6
.......................................................................CGGGACGAAGGCACCCAAAGTCGAGAGCAA.............................................................................................. 30 0 4 1.75 7 7
.........................................................................GGACGAAGGCACCCAAAGTCGAGAGCAACC............................................................................................ 30 0 4 1.50 6 6
.........................................................................GGACGAAGGCACCCAAAGTCGAGAGCAA.............................................................................................. 28 0 4 1.25 5 5
......................................................................................................................CCCGGTGCAGTGGGAGGGAAGTGGGAACAT............................................... 30 0 6 1.17 7 7
....................................................................................................................................................................TTCCAGGCCGCCCGGCCGGCGTACCGCTCCT 31 3 3 1.00 3 3
...................................................................................................................................................................ATTCCAGGCCGCCCGGCCGGCGTACCGCTCCT 32 3 2 1.00 2 2
................................................................................................................................................................CGCACGCCAGGCCGCCCGGCCGGCGTACCGCTCCT 35 1 2 1.00 2 2
.................................................................................................................................................................GCACGCCAGGCCGCCCGGCCGGCGTACCGCTCCT 34 1 2 1.00 2 2
..........................................................................................................................................GTGGGAACATAGCGCGTCCACTCGCACGC............................ 29 0 3 1.00 3 3
.........................................................................TGACGAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 32 1 5 0.80 4 4
............................................................................TGAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 29 1 4 0.75 3 3
.................................................................................................................................................CATAGGGCGTCCACTCACGCGCCAGGCC...................... 28 3 4 0.75 3 3
..........................................................................GACGAAGGCACCCAAAGTCGAGAGCAACCA........................................................................................... 30 0 4 0.75 3 3
..................................................................................................................................................................TAAGCCAGGCCGCCCGGCCGGCGTACCGCTCCT 33 3 2 0.50 1 1
.....................................................................................................................TCCCGGTGCAGTGGGAGGGAAGTGGGAACAT............................................... 31 1 6 0.50 3 3
...............................................................................AGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 26 0 4 0.50 2 2
......................................................................CCGGGACGAAGGCACCCAAAGTCGAGAGCAC.............................................................................................. 31 1 4 0.50 2 2
.........................................................................................................................................................GTCCACTCGCACGCCAGGCCGCCCGGCCGGCGTACCGCTCCT 42 1 2 0.50 1 1
...........................................................................ACGAAGGCACCCAAAGTCGAGAGCAACCA........................................................................................... 29 0 4 0.50 2 2
....................................................................TTCCGGGACGAAGGCACCCAAAGTCGAGAGC................................................................................................ 31 2 4 0.50 2 2
...............................................................................................................................................................TCGCACGCCAGGCCGCCCGGCCGGCGTACCGCTCCT 36 1 2 0.50 1 1
............................................................................TGAAGGCACCCAAAGTCGAGAGCAACCACG......................................................................................... 30 1 4 0.50 2 2
.......................................................................AGGGACGAAGGCACCCAAAGTCGAGAGCAACC............................................................................................ 32 1 4 0.50 2 2
......................................................................CCGGGACGAAGGCACCCAAAGTCGAGAGC................................................................................................ 29 0 4 0.50 2 2
..............................................................................AAGGCACCCAAAGTCGAGAGCAACCACGA........................................................................................ 29 0 4 0.50 2 2
.......................................................................................................................................................................CAGGCCGCCCGGCCGGCGCACTGCTCCT 28 1 2 0.50 1 1
...................................................................................................................................................................ACGCCAGGCCGCCCGGCCGGCGTACCGCTCC. 31 1 2 0.50 1 1
......................................................................CCGGGACGAAGGCACCCAAAGTCGAGAGCAA.............................................................................................. 31 0 4 0.50 2 2
..........................................................................GACGAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 31 0 4 0.50 2 2
........................................................................TTTACGAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 33 3 5 0.40 2 2
......................................................................................................................................................................CCAGGCCCCCCGGCCGGCGTACCGCTCCT 29 2 3 0.33 1 1
..............................................................................................................................................GAACATAGAGCGTCCACTCGCACGCCAGGCC...................... 31 1 3 0.33 1 1
......................................................................................................................................................................ACAGGCCTCCCGGCCGGCGTACCGCTCCT 29 3 3 0.33 1 1
...................................................................................................................................................TAGCGCGTCCACTCGCACGCCAGGCC...................... 26 0 3 0.33 1 1
.....................................................................................................................................................................ATCAGGCCGCCCGGCCGGCGTACCGCTCCT 30 3 3 0.33 1 1
.....................................................................................................................................................................GCCAAGCCGCCCGGCCGGCGTACCGCTCCT 30 2 3 0.33 1 1
......................................................................................................................................................................CCAGGCCGCCCGGCCGGCGTACCGCTCC. 28 1 3 0.33 1 1
......................................................................................................................................................................TCAGGCCGCCCGGCCGGCGTACCGCT... 26 2 3 0.33 1 1
..................................................................TTACCCGGGACGAAGGCACCCAAAGTCGAGAGC................................................................................................ 33 2 3 0.33 1 1
.....................................................................................................................................................................TCCAGGCCGCCCGGCCGGCGTACCGCTCCT 30 2 3 0.33 1 1
......................................................................................................................................................................TCCGGCCGCCCGGCCGGCGTACCGCTCCT 29 3 3 0.33 1 1
......................................................................................................................................................................ACAGGCCGCCCGGCCGGCGTACCGCTCCT 29 2 3 0.33 1 1
.......................................................................................................................................................................CAGGCCGCCCGGCCGGCGTACCGCT... 25 1 3 0.33 1 1
....................................................................................................................TTTCCGGTGCAGTGGGAGGGAAGTGGGAACAT............................................... 32 3 6 0.33 2 2
......................................................................................................................AACGGTGCAGTGGGAGGGAAGTGGGAACAT............................................... 30 2 6 0.33 2 2
................................................................................................................................................TCATAGCGCGTCCACTCGCACGCCAGGCC...................... 29 1 3 0.33 1 1
......................................................................................................................................................................ACAGGCCGCCCGGCCGGCGTACCGCT... 26 2 3 0.33 1 1
.......................................................................................................................................................................CAGGCCGCCCGGCCGGCGTACCGCTCCT 28 1 3 0.33 1 1
......................................................................................................................................................................TCAGGCCGCCCGGCGGGCGTACCGCTCCT 29 3 3 0.33 1 1
..............................................................................................................................AGTGGGAGGGAAGTGGGAACATAGGGCGT........................................ 29 1 3 0.33 1 1
...........................................................................................................................TGCAGTGGGAGGGAAGTGGGAACAT............................................... 25 0 6 0.33 2 2
..............................................................................AAGGCACCCAAAGTCGAGAGCAACCA........................................................................................... 26 0 4 0.25 1 1
...................................................................GAACCGGGACGAAGGCACCCAAAGTCCAGAGC................................................................................................ 32 2 4 0.25 1 1
.......................................................................CGGGACGAAGGCACCCAAAGTCGAGAGCAACCACGACCA..................................................................................... 39 0 4 0.25 1 1
..........................................................................GACGAAGGCAACCAAAGTCGAGAGCAACCA........................................................................................... 30 1 4 0.25 1 1
............................................................................CGAAGGCCCCCAAAGTCGAGAGCAACCAC.......................................................................................... 29 1 4 0.25 1 1
........................................................................................................................................................CGTCCACTCGCACGCCAGGCCGCCCG................. 26 0 4 0.25 1 1
...........................................................................TTGAAGGCACCCAAAGTCGAGAGCAACCACG......................................................................................... 31 2 4 0.25 1 1
.........................................................................GGACGAAGGCACCCAAAGTCGAGAGCAACCA........................................................................................... 31 0 4 0.25 1 1
.........................................................................GGACGAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 32 0 4 0.25 1 1
..........................................................................AACGAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 31 1 4 0.25 1 1
.....................................................................CCCGGGACGAAGGCACCCAAAGTCCAGAGCAA.............................................................................................. 32 1 4 0.25 1 1
...................................................................TATCCGGGACGAAGGCACCCAAAGTCCAGAGCAA.............................................................................................. 34 3 4 0.25 1 1
............................................................................CGAAGGCACCAAAAGTCGAGAGCAACCACG......................................................................................... 30 1 4 0.25 1 1
..............................................................................AAGGCACCCAAAGTCGAGAGCAACCACGAC....................................................................................... 30 0 4 0.25 1 1
.....................................................................CCCGGGACGAAGGCACCCAAAGTCCAGAGCC............................................................................................... 31 2 4 0.25 1 1
.......................................................................CGGGACGAAGGCACCCAAAATCGAGAGCA............................................................................................... 29 1 4 0.25 1 1
.......................................................................CGGGACGAAGGCACCCAAAGTCGAGAGCA............................................................................................... 29 0 4 0.25 1 1
........................................................................GGGACGAAGGCACCCAAAGTCGAGAGCAA.............................................................................................. 29 0 4 0.25 1 1
.........................................................................GGACGAAGGCACCCAAAGTCGAGAGCAAC............................................................................................. 29 0 4 0.25 1 1
............................................................................CGAAGGCACCCAAAGTCGAGAGCAA.............................................................................................. 25 0 4 0.25 1 1
...........................................................................ACGAAGGCACCCAAAGTCGAGAGCAA.............................................................................................. 26 0 4 0.25 1 1
.........................................................................GGACGAAGGCCCCCAAAGTCGAGGGCAACC............................................................................................ 30 2 4 0.25 1 1
...................................................................AATCCGGGACGAAGGCACCCAAAGTCCAGAGCAA.............................................................................................. 34 3 4 0.25 1 1
..............................................................................AAGGCACACAAAGTCGAAAGCAACCAC.......................................................................................... 27 2 4 0.25 1 1
..........................................................................GACGAAGGCACCCAAAGTCGAGAGCAA.............................................................................................. 27 0 4 0.25 1 1
.....................................................................TCCGGGACGAAGGCACCCAAAGTCGAGAGC................................................................................................ 30 1 4 0.25 1 1
............................................................................CGAAGGCACCCAAAGTCGAGAGCAACC............................................................................................ 27 0 4 0.25 1 1
.............................................................................AAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 28 1 4 0.25 1 1
......................................................................................................................................................................ACAGGCCGCCCGGCCGGGGTACCGCTCCT 29 3 4 0.25 1 1
........................................................................TGGACGAAGCCACCCAAAGTCGAGAGCAACC............................................................................................ 31 2 4 0.25 1 1
....................................................................TTCCGGGACGAAGGCACCCAAAGTCGAGAGCA............................................................................................... 32 2 4 0.25 1 1
.......................................................................CGGGACGAAGGCACCCAAAGTCGAGAGC................................................................................................ 28 0 4 0.25 1 1
...............................................................................AGGCACCCAAAGTCGAGAGCAACCACGACCA..................................................................................... 31 0 4 0.25 1 1
............................................................................CGAAGGCAACCAAAGTCGAGAGCAACCACC......................................................................................... 30 2 4 0.25 1 1
........................................................................GGGACGAAGGCACCCAAGGTCGAGAGCAC.............................................................................................. 29 2 4 0.25 1 1
.............................................................................GAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 28 0 4 0.25 1 1
............................................................................CGAAGGCACCCAAAGTCAAGAGCAACCACG......................................................................................... 30 1 5 0.20 1 1
.......................................................................CGGGACGAAGGCACCCAAAGTCAAGAGCA............................................................................................... 29 1 5 0.20 1 1
.........................................................................TGACGAAGGCACCCAAAGGCGAGAGCAACC............................................................................................ 30 2 5 0.20 1 1
.........................................................................GGACGAAGGCACCCAAAGTCAAGGGCAACC............................................................................................ 30 2 5 0.20 1 1
........................................................................GGGACGAAGGCACCCAAAGTCAAGAGCA............................................................................................... 28 1 5 0.20 1 1
........................................................................GGGACGAAGGCACCCAAAGTCAAGAGCAACC............................................................................................ 31 1 5 0.20 1 1
.........................................................................TTTCGAAGGCACCCAAAGTCGAGAGCAACCAC.......................................................................................... 32 3 5 0.20 1 1
.........................................................................GGACGAAGGCCCCCAAAGTCAAGTGCAACC............................................................................................ 30 3 5 0.20 1 1
...............................................................................AGGCACCCAAAGTCAAGAGCAACCACGACCA..................................................................................... 31 1 5 0.20 1 1
...........................................................................ACGAAGGCACACAAAGTCAAGAGCAACCAC.......................................................................................... 30 2 5 0.20 1 1
.........................................................................GGACGAAGGCACCCAAAGTCAAGCGCAACC............................................................................................ 30 2 5 0.20 1 1
...........................................................................ACGAAGGCACCCAAAGTCAAGAGCAACCAC.......................................................................................... 30 1 5 0.20 1 1
.........................................................................TGACGAAGGCACCCAAAGTCAAGGGCAACC............................................................................................ 30 3 6 0.17 1 1
.......................................................................................................................CCGGTGCAGAGGGAGGGAAGTGAGAACAT............................................... 29 2 6 0.17 1 1
...........................................................................................................................TGCAGGGGGAGGGAAGTGGGAACAT............................................... 25 1 6 0.17 1 1
................................................................................................................................TGGGAGGGAAGTGGGAACAT............................................... 20 0 6 0.17 1 1
.....................................................................................................................TTCCGGTGCAGTGGGAGGGAAGTGGGAACAT............................................... 31 2 6 0.17 1 1
......................................................................................................................ACCGGTGCAGTGGGAGGGAAGTGGGAACAT............................................... 30 1 6 0.17 1 1
......................................................................................................................TCCGGTGCAGGGGGAGGGAAGTGGGAACAT............................................... 30 2 6 0.17 1 1
.........................................................................TGACGAAGGCACCCAAAGTCTAGAGCAACCAC.......................................................................................... 32 2 6 0.17 1 1
.......................................................................................................................CCGGTGCAGTGGGAGGGAAGTGGGAACATA.............................................. 30 0 6 0.17 1 1
.............................................................................................................................CAGTGGGAGGGAAGTGGGAACAT............................................... 23 0 6 0.17 1 1
........................................................................................................................CGGTGCAGTGGGAGGGAAGTGGGAACAT............................................... 28 0 6 0.17 1 1
...................................................................................TCCCAAAGTCTAGAGCAACCACGACCACGA.................................................................................. 30 2 8 0.13 1 1
...................................................................................GCCCAAAGTCGAGAGCAA.............................................................................................. 18 1 11 0.09 1 1

Generated: 09/01/2015 at 11:40 AM