ID:

eca-mir-9128-1

 Coordinate:

chr13:26883703-26883827 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-77.8 -77.6 -77.4 -77.3
mature

  1. eca-mir-9128-2  chr13:25353685-25353712 +
  2. eca-mir-9128-2  chr13:26829972-26829999 +
  3. eca-mir-9128-2  chr13:26881042-26881069 +
  4. eca-mir-9128-1  chr13:26883763-26883790 +
star

Sense Strand Reads

cgggcccgcggtgccgggcTGGAGTGGTCTGGCCCTGCTGCCGCTCCCCTGGCACTTGCCGAGGAGCGGGAGCCGGGTGGGTGCTGGCCCTGCTTCCGTGGGTTTCAGCTCTCGTTGGTGCTGGTGCTCGCGTGGGCCACGTCACCCTCCCTTCACCCTTGTATCGTGCAGGTGAGCGTGCGGTCCCGCGGGCCGGCCGCGTGGCGAGGACCAGCCGGCGGCACG

***********************************(((.(((((........((((((((((.....(((....(((.(((((.((((((......(((((((.(((((.((....)).))))).))))))).))))))...))))).)))....))).....))).))))))).....)))))...)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................................................CTCGTTGGTGCTGGTGCTCGCGTGGGCC....................................................................................... 28 0 4 1.00 4 4
..............................................................................................................CTCGTTGGTGCTGGTGCTCGCGTGGGCCA...................................................................................... 29 0 4 0.75 3 3
........................................................................................................................................................................................................GTGGCGAGGACCAGCCGGC...... 19 0 3 0.33 1 1
...............................................................................................................................................................................................................GGACCAGCCGGCGGCACG 18 0 3 0.33 1 1
........................................................................................................................................................................................................GTGGCGAGGGCCAGCCGGCGGCAC. 24 1 3 0.33 1 1
.....................................................................................................................................................................................................CGCGTGGCGAGGACCAGCCGGTGGCAC. 27 1 3 0.33 1 1
........................................................................................................................................................................................................GTGGCGAGGACCAGCCGGCGGCACG 25 0 3 0.33 1 1
..........................................................................................TCCTTCCGTGGGTTTCAGCTCTCGTTGGTG......................................................................................................... 30 1 4 0.25 1 1
........................................................................................................................CTGGTGCTCGCGTGGGCCACGAAA................................................................................. 24 2 4 0.25 1 1
............................................................................................................CTCTCGTTGGTGCTGGTGCTCGCGTGGGCC....................................................................................... 30 0 4 0.25 1 1
..............................................................................................................CTCGTTGGTGCTGGTGCTCGCGTGGGCCT...................................................................................... 29 1 4 0.25 1 1
..........................................................................................TGCTTCCGTGGGTTTCAGCTCTCGTTGGTG......................................................................................................... 30 0 4 0.25 1 1
............................................................................................CTTCCGTGGGTTTCGGCTC.................................................................................................................. 19 1 4 0.25 1 1
.......................................................................................................TTCAGCTCTCGTTGGTGCT....................................................................................................... 19 0 8 0.25 2 2
.............................................................................................TTCCGTGGGTTTCAGCTCT................................................................................................................. 19 0 4 0.25 1 1
..............................................................................................TCCGTGGGTTTCAGCTCTCGTTGGTGCTG...................................................................................................... 29 0 4 0.25 1 1
........................................................................................................................CTGGTGCTCGCGTGGGCCACGTCACCC.............................................................................. 27 0 4 0.25 1 1
.............................................................................................................TCTCGTTGGTGCTGGTGCTCGCGTGGGCC....................................................................................... 29 0 4 0.25 1 1
........................................................................................................................CTGGTGCTCGCGTGGGCCACGTCAAC............................................................................... 26 1 4 0.25 1 1
...................................................................................................................TGGTGCTGGAGCTCGCGTGGGCCACGTC.................................................................................. 28 1 5 0.20 1 1
.................................................................................................GTGGGTTTCAGCTCTCGTTGGTGCT....................................................................................................... 25 0 6 0.17 1 1
..........................................................................................................AGCTCTCGTTGGTGCTGGTGCTCGC.............................................................................................. 25 0 6 0.17 1 1
......................................................................................................TTTCAGCTCTCGTTGGTGCTGGTGCT................................................................................................. 26 0 7 0.14 1 1
.....................................................................................................GTTTCGGCTCTCGTTGGTG......................................................................................................... 19 1 7 0.14 1 1
.......................................................................................................TTCAGCTCTCGTTGGTG......................................................................................................... 17 0 8 0.13 1 1
......................................................................................................TTTCAGCTCTCGTTGGTG......................................................................................................... 18 0 8 0.13 1 1
........................................................................................................TCAGCTCTCGTTGGTGC........................................................................................................ 17 0 9 0.11 1 1

Anti-sense strand reads

GgggGGGgGggtgGGgggGACCTCACCAGACCGGGACGACGGCGAGGGGACCGTGAACGGCTCCTCGCCCTCGGCCCACCCACGACCGGGACGAAGGCACCCAAAGTCGAGAGCAACCACGACCACGAGCGCACCCGGTGCAGTGGGAGGGAAGTGGGAACATAGCACGTCCACTCGCACGCCAGGGCGCCCGGCCGGCGCACCGCTCCTGGTCGGCCGCCGTGC

***********************************(((.(((((........((((((((((.....(((....(((.(((((.((((((......(((((((.(((((.((....)).))))).))))))).))))))...))))).)))....))).....))).))))))).....)))))...)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................................................................................................GTGGGAACATAGAACGTCCACTCGCACGC........................................... 29 1 2 20.00 40 40
...........................................................................................CGAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 29 0 4 4.00 16 16
..........................................................................................ACGAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 30 0 4 3.50 14 14
.....................................................................................................................................TCCGGTGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 30 1 6 2.50 15 15
......................................................................................................................................CCGGTGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 29 0 6 2.33 14 14
......................................................................................CGGGACGAAGGCACCCAAAGTCGAGAGCAA............................................................................................................. 30 0 4 1.75 7 7
........................................................................................GGACGAAGGCACCCAAAGTCGAGAGCAACC........................................................................................................... 30 0 4 1.50 6 6
........................................................................................GGACGAAGGCACCCAAAGTCGAGAGCAA............................................................................................................. 28 0 4 1.25 5 5
.....................................................................................................................................CCCGGTGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 30 0 6 1.17 7 7
..........................................................................................................................................................TGGGAACATAGAACGTCCACTCGCACGT........................................... 28 2 2 1.00 2 2
........................................................................................TGACGAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 32 1 5 0.80 4 4
...........................................................................................TGAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 29 1 4 0.75 3 3
.........................................................................................GACGAAGGCACCCAAAGTCGAGAGCAACCA.......................................................................................................... 30 0 4 0.75 3 3
.........................................................................................................................................................GTGGGAACATAGAACGGCCACTCGCACGC........................................... 29 2 2 0.50 1 1
.............................................................................TCCCACGACCGGGACGAAGGC............................................................................................................................... 21 1 2 0.50 1 1
...................................................................................TTCCGGGACGAAGGCACCCAAAGTCGAGAGC............................................................................................................... 31 2 4 0.50 2 2
......................................................................................AGGGACGAAGGCACCCAAAGTCGAGAGCAACC........................................................................................................... 32 1 4 0.50 2 2
.....................................................................................CCGGGACGAAGGCACCCAAAGTCGAGAGCAA............................................................................................................. 31 0 4 0.50 2 2
.........................................................................................................................................................GTGGGAACATAGAACGTCCACTCGCACGCC.......................................... 30 1 2 0.50 1 1
....................................................................................................................................................GGGAAGTGGGAACATAGAACGTCCACTCGC............................................... 30 1 2 0.50 1 1
....................................................................................................................................TCCCGGTGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 31 1 6 0.50 3 3
.........................................................................................................................................................GTGGGAACATAGAACGTCCACTCGCAC............................................. 27 1 2 0.50 1 1
.....................................................................................CCGGGACGAAGGCACCCAAAGTCGAGAGC............................................................................................................... 29 0 4 0.50 2 2
...........................................................................................TGAAGGCACCCAAAGTCGAGAGCAACCACG........................................................................................................ 30 1 4 0.50 2 2
.............................................................................................AAGGCACCCAAAGTCGAGAGCAACCACGA....................................................................................................... 29 0 4 0.50 2 2
.....................................................................................CCGGGACGAAGGCACCCAAAGTCGAGAGCAC............................................................................................................. 31 1 4 0.50 2 2
.........................................................................................GACGAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 31 0 4 0.50 2 2
..........................................................................................ACGAAGGCACCCAAAGTCGAGAGCAACCA.......................................................................................................... 29 0 4 0.50 2 2
...........................................................................................................................................................GGGAACATAGAACGTCCACTCGCACGCCA......................................... 29 1 2 0.50 1 1
..............................................................................................AGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 26 0 4 0.50 2 2
.......................................................................................TTTACGAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 33 3 5 0.40 2 2
..........................................................................................................................................TGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 25 0 6 0.33 2 2
.....................................................................................................................................AACGGTGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 30 2 6 0.33 2 2
..................................................................................................................................................GAGGGAAGTGGGAACATAGAACGTCCACTC................................................. 30 1 3 0.33 1 1
...................................................................................................................................TTTCCGGTGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 32 3 6 0.33 2 2
.......................................................................................GGGACGAAGGCACCCAAAGTCGAGAGCAA............................................................................................................. 29 0 4 0.25 1 1
........................................................................................GGACGAAGGCACCCAAAGTCGAGAGCAACCA.......................................................................................................... 31 0 4 0.25 1 1
..........................................................................................TTGAAGGCACCCAAAGTCGAGAGCAACCACG........................................................................................................ 31 2 4 0.25 1 1
...........................................................................................CGAAGGCACCCAAAGTCGAGAGCAA............................................................................................................. 25 0 4 0.25 1 1
.............................................................................................AAGGCACACAAAGTCGAAAGCAACCAC......................................................................................................... 27 2 4 0.25 1 1
.............................................................................................AAGGCACCCAAAGTCGAGAGCAACCA.......................................................................................................... 26 0 4 0.25 1 1
...........................................................................................CGAAGGCCCCCAAAGTCGAGAGCAACCAC......................................................................................................... 29 1 4 0.25 1 1
.........................................................................................GACGAAGGCAACCAAAGTCGAGAGCAACCA.......................................................................................................... 30 1 4 0.25 1 1
....................................................................................TCCGGGACGAAGGCACCCAAAGTCGAGAGC............................................................................................................... 30 1 4 0.25 1 1
...........................................................................................CGAAGGCAACCAAAGTCGAGAGCAACCACC........................................................................................................ 30 2 4 0.25 1 1
.........................................................................................AACGAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 31 1 4 0.25 1 1
............................................................................................AAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 28 1 4 0.25 1 1
..........................................................................................ACGAAGGCACCCAAAGTCGAGAGCAA............................................................................................................. 26 0 4 0.25 1 1
...................................................................................TTCCGGGACGAAGGCACCCAAAGTCGAGAGCA.............................................................................................................. 32 2 4 0.25 1 1
......................................................................................CGGGACGAAGGCACCCAAAGTCGAGAGCAACCACGACCA.................................................................................................... 39 0 4 0.25 1 1
..............................................................................................AGGCACCCAAAGTCGAGAGCAACCACGACCA.................................................................................................... 31 0 4 0.25 1 1
......................................................................................CGGGACGAAGGCACCCAAAGTCGAGAGC............................................................................................................... 28 0 4 0.25 1 1
........................................................................................GGACGAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 32 0 4 0.25 1 1
........................................................................................GGACGAAGGCCCCCAAAGTCGAGGGCAACC........................................................................................................... 30 2 4 0.25 1 1
...........................................................................................CGAAGGCACCCAAAGTCGAGAGCAACC........................................................................................................... 27 0 4 0.25 1 1
...........................................................................................CGAAGGCACCAAAAGTCGAGAGCAACCACG........................................................................................................ 30 1 4 0.25 1 1
.......................................................................................TGGACGAAGCCACCCAAAGTCGAGAGCAACC........................................................................................................... 31 2 4 0.25 1 1
......................................................................................CGGGACGAAGGCACCCAAAATCGAGAGCA.............................................................................................................. 29 1 4 0.25 1 1
.........................................................................................GACGAAGGCACCCAAAGTCGAGAGCAA............................................................................................................. 27 0 4 0.25 1 1
............................................................................................GAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 28 0 4 0.25 1 1
........................................................................................GGACGAAGGCACCCAAAGTCGAGAGCAAC............................................................................................................ 29 0 4 0.25 1 1
......................................................................................CGGGACGAAGGCACCCAAAGTCGAGAGCA.............................................................................................................. 29 0 4 0.25 1 1
.......................................................................................GGGACGAAGGCACCCAAGGTCGAGAGCAC............................................................................................................. 29 2 4 0.25 1 1
.............................................................................................AAGGCACCCAAAGTCGAGAGCAACCACGAC...................................................................................................... 30 0 4 0.25 1 1
.......................................................................................GGGACGAAGGCACCCAAAGTCAAGAGCAACC........................................................................................................... 31 1 5 0.20 1 1
...........................................................................................CGAAGGCACCCAAAGTCAAGAGCAACCACG........................................................................................................ 30 1 5 0.20 1 1
.......................................................................................GGGACGAAGGCACCCAAAGTCAAGAGCA.............................................................................................................. 28 1 5 0.20 1 1
..........................................................................................ACGAAGGCACACAAAGTCAAGAGCAACCAC......................................................................................................... 30 2 5 0.20 1 1
........................................................................................GGACGAAGGCACCCAAAGTCAAGGGCAACC........................................................................................................... 30 2 5 0.20 1 1
......................................................................................CGGGACGAAGGCACCCAAAGTCAAGAGCA.............................................................................................................. 29 1 5 0.20 1 1
........................................................................................GGACGAAGGCACCCAAAGTCAAGCGCAACC........................................................................................................... 30 2 5 0.20 1 1
........................................................................................TGACGAAGGCACCCAAAGGCGAGAGCAACC........................................................................................................... 30 2 5 0.20 1 1
..........................................................................................ACGAAGGCACCCAAAGTCAAGAGCAACCAC......................................................................................................... 30 1 5 0.20 1 1
..............................................................................................AGGCACCCAAAGTCAAGAGCAACCACGACCA.................................................................................................... 31 1 5 0.20 1 1
........................................................................................GGACGAAGGCCCCCAAAGTCAAGTGCAACC........................................................................................................... 30 3 5 0.20 1 1
........................................................................................TTTCGAAGGCACCCAAAGTCGAGAGCAACCAC......................................................................................................... 32 3 5 0.20 1 1
....................................................................................................................................TTCCGGTGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 31 2 6 0.17 1 1
........................................................................................TGACGAAGGCACCCAAAGTCTAGAGCAACCAC......................................................................................................... 32 2 6 0.17 1 1
...............................................................................................................................................TGGGAGGGAAGTGGGAACAT.............................................................. 20 0 6 0.17 1 1
......................................................................................................................................CCGGTGCAGAGGGAGGGAAGTGAGAACAT.............................................................. 29 2 6 0.17 1 1
.......................................................................................................................................CGGTGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 28 0 6 0.17 1 1
............................................................................................................................................CAGTGGGAGGGAAGTGGGAACAT.............................................................. 23 0 6 0.17 1 1
..........................................................................................................................................TGCAGGGGGAGGGAAGTGGGAACAT.............................................................. 25 1 6 0.17 1 1
......................................................................................................................................CCGGTGCAGTGGGAGGGAAGTGGGAACATA............................................................. 30 0 6 0.17 1 1
.....................................................................................................................................TCCGGTGCAGGGGGAGGGAAGTGGGAACAT.............................................................. 30 2 6 0.17 1 1
........................................................................................TGACGAAGGCACCCAAAGTCAAGGGCAACC........................................................................................................... 30 3 6 0.17 1 1
.....................................................................................................................................ACCGGTGCAGTGGGAGGGAAGTGGGAACAT.............................................................. 30 1 6 0.17 1 1
..................................................................................................TCCCAAAGTCTAGAGCAACCACGACCACGA................................................................................................. 30 2 8 0.13 1 1
..................................................................................................GCCCAAAGTCGAGAGCAA............................................................................................................. 18 1 11 0.09 1 1

Generated: 09/01/2015 at 11:41 AM