ID:

eca-mir-9125

 Coordinate:

chr30:4470733-4470867 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-72.7 -72.5 -72.4

Sense Strand Reads

AGGCCACTTGCCCCTCCCAGCCAGAGGCCCTGTTCCCATGTGCTCACCTAACCCCCATCCCACCCCTGACCGGAGCCCTGTGCCCTCAGCTCCCAGGTGTGTCCTCGGCCGAGCCGTGGATGGAGAGGGCGGGGTATCCTGGGAGCCTGGGTGAGTGGCTCCTGCCCGGCCCAGGCCCTGGAGAGTCTGGCCCCCAGGCTGGAACGGAGGCCACGCCAAAGCCTTCACTTCCCTA

***********************************..........((((...(((..((((((.((((...(((((..((......))))))))))).)))(((.((((...)))).))).)))..)))..)))).(((((((.((((((((....(((....)))..))))))))))))).))((((((...)))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................TGACCGGAGCCCTGTGCCCTCAGCTCCCAGG.......................................................................................................................................... 31 0 1 14.00 14 14
..................................................................TGACCGGAGCCCTGTGCCCTCAGCTCCCAGT.......................................................................................................................................... 31 1 1 4.00 4 4
..............TCCCAGCCAGAGGCCCTGTTCCCATGTGC................................................................................................................................................................................................ 29 0 3 3.67 11 11
..................................................................TGACCGGAGCCCTGTGCCCTCAGCTC............................................................................................................................................... 26 0 1 3.00 3 3
..................................CCCATGTGCTCACCTAACCCCCATCCCACCC.......................................................................................................................................................................... 31 0 2 2.50 5 5
..................................................................TGACCGGAGCCCTGTGCCCTCAGCTCCCAGGT......................................................................................................................................... 32 0 1 2.00 2 2
..............TCCCAGCCAGAGGCCCTGTTCCCATGTGCTC.............................................................................................................................................................................................. 31 0 3 2.00 6 6
..................................................................TGACCGGAGCCGTGTGCCCTCAGCTCCCAGGT......................................................................................................................................... 32 1 1 1.00 1 1
..................................................................TGACCGGAGCCCTGTGCCCTCAGCTCCCAGGAT........................................................................................................................................ 33 2 1 1.00 1 1
..............................................................................TGTGCCCTCAGCTCCCAGGTGTGTCCTCGGC.............................................................................................................................. 31 0 1 1.00 1 1
.................................................................................GCCCTCAGCTCCCAGGTGTGTCCTCGGC.............................................................................................................................. 28 0 1 1.00 1 1
..............TCCCAGCCAGAGGCCCTGTTCCCATGTGCT............................................................................................................................................................................................... 30 0 3 1.00 3 3
..................................................................TGACCGGAGCCCTGTGCCCTCAGCTCCC............................................................................................................................................. 28 0 1 1.00 1 1
.....................................................................................TCAGCTCCCAGGTGTGTCCTCGGCCAAGACT....................................................................................................................... 31 3 1 1.00 1 1
..................................................................TGACCGGAGCCCTGTGCCCTCAGCTT............................................................................................................................................... 26 1 1 1.00 1 1
....................................................................ACCGGAGCCCTGTGCCCTCAGCTCCCAGG.......................................................................................................................................... 29 0 1 1.00 1 1
..............TCCCAGCCAGAGGCCCTGTTCCCATGTGT................................................................................................................................................................................................ 29 1 3 0.67 2 2
................................TTCCCATGTGCTCACCTAACCCCCATCCCA............................................................................................................................................................................. 30 0 2 0.50 1 1
.....................................ATGTGCTCACCTAACCCCCATCCCACCCCTGT...................................................................................................................................................................... 32 1 2 0.50 1 1
.......................GAGGCCCTGTTCCCATGTGCTCACCTAACCC..................................................................................................................................................................................... 31 0 2 0.50 1 1
................................TTCCCATGTGCTCACCTAACCCCCATCCAT............................................................................................................................................................................. 30 2 2 0.50 1 1
.................................TCCCATGTGCTCACCTAACCCTCATCCCACC........................................................................................................................................................................... 31 1 2 0.50 1 1
..........................................................................................TCCCAGGTGTGTCCTCGGCCAAGACGT...................................................................................................................... 27 2 2 0.50 1 1
.................................TCCCATGTGCTCACCTAACCCCCATCCCACC........................................................................................................................................................................... 31 0 2 0.50 1 1
......................................TGTGCTCACCTAACCCCCATCCCACCCCTG....................................................................................................................................................................... 30 0 2 0.50 1 1
.................................TCCCATGTGCTCACCTAACCCCCATCCCAAA........................................................................................................................................................................... 31 2 2 0.50 1 1
..............................TGTTCCCATGTGCTCACCTAACCCCCATA................................................................................................................................................................................ 29 1 2 0.50 1 1
.................................TCCCATGTGCTCACCTAACCCCCATCT............................................................................................................................................................................... 27 1 2 0.50 1 1
.................................TCCCATGTGCTCACCTAACCCCCATCCCACCCA......................................................................................................................................................................... 33 1 2 0.50 1 1
.................................TCCCATGTGCTCACCTAACCCCCATC................................................................................................................................................................................ 26 0 2 0.50 1 1
.................................TCCCATGTGCTCACCTAACACCCATCCCACCCA......................................................................................................................................................................... 33 2 2 0.50 1 1
................................TTCCCATGTGCTCACCTAACCCCCATCCCTTT........................................................................................................................................................................... 32 3 2 0.50 1 1
.................................TCCCATGTGCTCACCTAACCCCCATCCCAC............................................................................................................................................................................ 30 0 2 0.50 1 1
..............TCCCAGCCAGAGGCCCTGTGCCCATGTGC................................................................................................................................................................................................ 29 1 3 0.33 1 1
..............TCCCAGCCAGAGGCCCTGTTCCCATGTGA................................................................................................................................................................................................ 29 1 3 0.33 1 1
..............TCCCAGCCAGAGGCCCTGTTCCCATGTGCTT.............................................................................................................................................................................................. 31 1 3 0.33 1 1
............................................................CACCCCTGACCGGAGCCCTGTGCCCTCA................................................................................................................................................... 28 0 3 0.33 1 1
..............TCCCAGCCAGAGGCCCTGTTCCCATG................................................................................................................................................................................................... 26 0 3 0.33 1 1
......................................TGTGCTCACCTAACCCCCATCCCACAAA......................................................................................................................................................................... 28 3 3 0.33 1 1
..............TCCCAGCCAGAGGCCCTGTTCCCATGTGCTCA............................................................................................................................................................................................. 32 0 3 0.33 1 1
..............TCCCAGCCAGAGGCCCTGTTCGCATAA.................................................................................................................................................................................................. 27 3 4 0.25 1 1
.................................................................................................................................................................................................CCAGGCTGGAACTGAGGCCGGGCCAAAGCC............ 30 3 4 0.25 1 1

Anti-sense strand reads

TCCGGTGAACGGGGAGGGTCGGTCTCCGGGACAAGGGTACACGAGTGGATTGGGGGTAGGGTGGGGACTGGCCTCGGGACACGGGAGTCGAGGGTCCACACAGGAGCCGGCTCGGCACCTACCTCTCCCGCCCCATAGGACCCTCGGACCCACTCACCGAGGACGGGCCGGGTCCGGGACCTCTCAGACCGGGGGTCCGACCTTGCCTCCGGTGCGGTTTCGGAAGTGAAGGGAT

***********************************..........((((...(((..((((((.((((...(((((..((......))))))))))).)))(((.((((...)))).))).)))..)))..)))).(((((((.((((((((....(((....)))..))))))))))))).))((((((...)))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................AGTCGAGGGTCCACACAGGAGCCGGTTCT......................................................................................................................... 29 2 1 1.00 1 1
..........................................................................................AGGGTCCACACAGGAGCCGGTTCTGCACCT................................................................................................................... 30 2 2 1.00 2 2
.....................................................................................AGTCGGGGGTCCACACAGGAGCCGGTTCT......................................................................................................................... 29 3 1 1.00 1 1

Generated: 09/01/2015 at 12:01 PM