ID:

eca-mir-9120

 Coordinate:

chr12:33079799-33079915 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

GGGCTCAGTCCCCCCAGACGTCCAAGTCAGCCATATGGGACTGTAGTGAGAGCCTTGAGGCCACAAAGGGCTGTCATGCAGGGATGAAGGGCGGTGCCTGTGGGTGGATGCACTCCTCAGTCTCCCTCTCTCTGCAGCTCAGAGCCCTGGCGCTGTGGAGGAGATCCTAGACCGGGAGAACAAGCGGATGGCTGACAGCTTGGCCTCCAAGGTTACC

***********************************.(((((((..((((.((((((..........)))))).))))(((((.((........)).)))))(((((....)))))..))))))).(((.(((((((((((((....)))).)))))))))))).((((.....)))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................................................................................................................TCCTAGACCGGGAGAACAAGCGGATGGCTGT...................... 31 1 1 44.00 44 44
....................................................................................................................................................................TCCTAGACCGGGAGAACAAGCGGATGGCTG....................... 30 0 1 10.00 10 10
....................................................................................................................................................................TCCTAGACCGGGAGAACAAGCGGATGGCTGTT..................... 32 2 1 4.00 4 4
...................................................................................................................................................TGGCGCTGTGGAGGAGATCCTAGACC............................................ 26 0 1 3.00 3 3
.................................................................................................................................................................................GAACAAGCGGATGGCTGACAGCTTGGCC............ 28 0 1 3.00 3 3
...............................................................................................................................................................................GAGAACAAGCGGATGGCTGACAGCTTGGCC............ 30 0 1 3.00 3 3
...................................................................................................................................................................ATCCTAGACCGGGAGAACAAGCGGAT............................ 26 0 1 2.00 2 2
..................................................................................................................................................................................AACAAGCGGATGGCTGACAGCTTGGCCTCC......... 30 0 1 2.00 2 2
..................................................................................................................................................................................CACAAGCGGATGGCTGACAGCTTGGCCTCC......... 30 1 1 1.00 1 1
....................................................................................................................................................................TCCTAGACCGGGAGAACAAGCGGATGGCTGAA..................... 32 1 1 1.00 1 1
....................................................................................................................TCAGTCTCCCTCTCTCTGCAGT............................................................................... 22 1 2 1.00 2 2
...................................................................................................................................................TGGCGCTGTGGAGGAGATCCTAGACCGGGATT...................................... 32 2 1 1.00 1 1
.....................................................................................................................................................GCGCTGTGGAGGAGATCCTAGACCGGGAGT...................................... 30 1 1 1.00 1 1
.................................................................................................................................................CCTGGCGCTGTGGAGGAGATCCTAGAC............................................. 27 0 1 1.00 1 1
....................................................................................................................................................................TCCTAGACCGGGAGAACAAGCGGATGGC......................... 28 0 1 1.00 1 1
.......................................................................................................................................................................TAGACCGGGAGAACAAGCGGATGGCTGACAGC.................. 32 0 1 1.00 1 1
.......................................................................................................................................................................TAGACCGGGAGAACAAGCGGATGGCTG....................... 27 0 1 1.00 1 1
...................................................................................................................................................TGGCGCTGTGGAGGAGATCCTAGAC............................................. 25 0 1 1.00 1 1
......................................................................................................................................................CGCTGTGGAGGAGATCCTAGACCGGGAA....................................... 28 1 1 1.00 1 1
.......................................................................................................................................................................TAGACCGGGAGAACAAGCGGATGGCTGACAAA.................. 32 2 1 1.00 1 1
....................................................................................................................................................................TCCTAGACCGGGAGAACAAGCGGATT........................... 26 1 1 1.00 1 1
..................................................................................................................................................CTGGCGCTGTGGAGGAGATCCTAGAC............................................. 26 0 1 1.00 1 1
.......................................................................................................................................................................TAGACCGGGAGAACAAGCGGATGGCTGACA.................... 30 0 1 1.00 1 1
.......................................................................................................................................................................TAGACCGGGAGAACAAGCGGATGGCTGAAA.................... 30 1 1 1.00 1 1
.................................................................................................................................................................................GAACAAGCGGATGGCTGACAGCTTGGCCT........... 29 0 1 1.00 1 1
....................................................................................................................................................................TCCTAGACCGGGAGAACAAGCGGATGGCTA....................... 30 1 1 1.00 1 1
.......................................................................................................................................................................TAGACCGGGAGAACAAGCGGATGGCTCA...................... 28 1 1 1.00 1 1
.......................................................................................................................................................................TAGACCGGGAGAACAAGCGGATGGCTGT...................... 28 1 1 1.00 1 1
....................................................................................................................................................................TCCTAGACCGGGAGAACAAGCGGATGT.......................... 27 1 1 1.00 1 1
................................................................................................................................................................................AGAACAAGCGGATGGCTGACAGCTTGGCC............ 29 0 1 1.00 1 1
....................................................................................................................................TGCAGCTCAGAGCCCTGGCGCTGTGGAGTT....................................................... 30 2 1 1.00 1 1
...................................................................................................................................................TGGCGCTGTGGAGGAGATCCTAGACCGGGAG....................................... 31 0 1 1.00 1 1

Anti-sense strand reads

CCCGAGTCAGGGGGGTCTGCAGGTTCAGTCGGTATACCCTGACATCACTCTCGGAACTCCGGTGTTTCCCGACAGTACGTCCCTACTTCCCGCCACGGACACCCACCTACGTGAGGAGTCAGAGGGAGAGAGACGTCGAGTCTCGGGACCGCGACACCTCCTCTAGGATCTGGCCCTCTTGTTCGCCTACCGACTGTCGAACCGGAGGTTCCAATGG

***********************************.(((((((..((((.((((((..........)))))).))))(((((.((........)).)))))(((((....)))))..))))))).(((.(((((((((((((....)))).)))))))))))).((((.....)))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:38 AM