ID:

eca-mir-9118

 Coordinate:

chr12:3391316-3391430 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.9 -30.9 -30.5 -30.5
mature

  1. eca-mir-9118  chr12:3391344-3391362 -
  2. chr12:25515986-25516004 +
  3. chr12:25528554-25528572 +
star

  1. eca-mir-9118  chr12:3391384-3391411 -
  2. chr12:25497246-25497273 +
  3. chr12:25515937-25515964 +
  4. chr12:25541115-25541142 +
  5. chrUn:10319841-10319868 -
  6. chrUn:57876606-57876633 -

Sense Strand Reads

GGCAATGTGGCTGGGCCACTCAGCACATAGCCTTCAGAGGCTGGGGTTAGGCTGGGAGCAAGGAGCTGGCTCCCATCACAATTCCCACGGACTCCAGATACGGGAGACCTTCTGGAGGGCGGTTCGTGTACTGAGTCTCCCTGATTGGTGAGCCATTTCCCTTCCGTGGGAGGAACATGGAAAGACAGTCACGTTTGCTTTCCCTGTGTGTGTTT

******************************************************...............(((((((((..((((.(((((((((((((...((....)).))))))).....))))))....)))).....)))).)).)))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................................................................GCGGTTCGTGTACTGAGTC.............................................................................. 19 0 3 0.33 1 1
............................................................................................................................CGTGTACTGAGTCTCCCTGATTGGTGA................................................................ 27 0 6 0.33 2 2
..........................................................................................................................TTCGTGTACTGAGTCTCCCTGATTGGTGAGCCT............................................................ 33 1 5 0.20 1 1
...........................................................................TCACAATTCCCACGGACTCCAGATACGGGAA............................................................................................................. 31 1 5 0.20 1 1
...........................................................................................................................TCGTGTACTGAGTCTCCCTGATTGGTGT................................................................ 28 1 6 0.17 1 1
.....................................................................CTCCCATCACAATTCCCACGGACTCCAG...................................................................................................................... 28 0 6 0.17 1 1
...........................................................................................................................TCGTGTACTGAGTCTCCCTGATTGGTGA................................................................ 28 0 6 0.17 1 1
...........................................................................................................................TCGTGTACTGAGTCTCCCTGATTGGT.................................................................. 26 0 6 0.17 1 1
...........................................................................TCACAATTCCCACGGACTCCAGATC................................................................................................................... 25 1 6 0.17 1 1
..............................................................................................................................TGTACTGAGTCTCCCTGATTGG................................................................... 22 0 7 0.14 1 1

Anti-sense strand reads

CCGTTACACCGACCCGGTGAGTCGTGTATCGGAAGTCTCCGACCCCAATCCGACCCTCGTTCCTCGACCGAGGGTAGTGTTAAGGGTGCCTGAGGTCTATGCCCTCTGGAAGACCTCCCGCCAAGCACATGACTCAGAGGGACTAACCACTCGGTAAAGGGAAGGCACCCTCCTTGTACCTTTCTGTCAGTGCAAACGAAAGGGACACACACAAA

***************************************************************...............(((((((((..((((.(((((((((((((...((....)).))))))).....))))))....)))).....)))).)).)))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................................................................CAAGCACATGACTCAGAGGGACTAACCACT................................................................ 30 0 6 0.33 2 2
...........................................................................................................................AGCACATGACTCAGAGGGACTAACCACT................................................................ 28 0 6 0.33 2 2
..........................................................................................................................................................................TCCTTGTACCTTTCTGTCAGTGCA..................... 24 0 7 0.29 2 2
.............................................................................................................................................................AGGGAAGGCACCCTCCTTGTACCTTTCTGT............................ 30 0 4 0.25 1 1
.........................................................................................................................CAAGCACGTGACTCAGAGGGACTAACCACT................................................................ 30 1 6 0.17 1 1
..........................................................................TAGTGTTAAGGGTGCCTGAGGTCTAT................................................................................................................... 26 0 6 0.17 1 1
........................................................................................................................CCAAGCACATGACTCAGAGGGACTAACCAC................................................................. 30 0 6 0.17 1 1
.........................................................................................................................AAAGCACATGACTCAGAGGGACTAACC................................................................... 27 1 6 0.17 1 1
..........................................................................................................................................................................TCCTTGTACCTTTCTGTCAGTGCAAAC.................. 27 0 7 0.14 1 1
.................................AGTCTCCGACCCCAAGCCGACCCTCGTT.......................................................................................................................................................... 28 1 20 0.05 1 1

Generated: 09/01/2015 at 11:39 AM