ID:

eca-mir-9117

 Coordinate:

chr12:26267169-26267287 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.1 -49.1 -48.8 -48.8

Sense Strand Reads

agaaggagttaggctccgggggaaagagtcttggcctcctcagatcctggctgagacaccgcctggctccgtgactcctgggcaggtggtgtcatcctggtttccttgtctttaaaatagggatcatgccatctgctgtatataccgccaggctgttcaggaatttttttaaagctagcggttgtgaaaacacctGTCACTTAGGCATTTGCTAATCAA

***********************************.....((....((((((((.(((..(((((((...(((.......((((((((((((.(((((.((((...........)))).))))).)))))))))))).....))).))))))))))))))..............))))....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................................................TAGGGATCATGCCATCTGCTGT................................................................................ 22 0 1 1.00 1 1

Anti-sense strand reads

TgTTggTgttTggGtGGgggggTTTgTgtGttggGGtGGtGTgTtGGtggGtgTgTGTGGgGGtggGtGGgtgTGtGGtgggGTggtggtgtGTtGGtggtttGGttgtGtttTTTTtTgggTtGTtgGGTtGtgGtgtTtTtTGGgGGTggGtgttGTggTTtttttttTTTgGtTgGggttgtgTTTTGTGGtCAGTGAATCCGTAAACGATTAGTT

***********************************.....((....((((((((.(((..(((((((...(((.......((((((((((((.(((((.((((...........)))).))))).)))))))))))).....))).))))))))))))))..............))))....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................................................................................TCCGACAAGTCCTTAAAAAAATTTCGAT.......................................... 28 0 1 3.00 3 3
.................................................................................................................................................GCGGTCCGACAAGTCCTTAAAAAAAT................................................ 26 0 1 2.00 2 2
................................................................................................................................................GGCGGTCCGACAAGTCCTTAAAAAAAT................................................ 27 0 1 2.00 2 2
.......................................................................................CCACAGTAGGACCAAAGGAACAGAAATTTTAT.................................................................................................... 32 0 1 2.00 2 2
..............................................................................................................................................ATGGCGGTCCGACAAGTCCTTAAAAAAAT................................................ 29 0 1 2.00 2 2
...................................................................................................................................................GGTCCGACAAGTCCTTAAAAAAATTTCGAT.......................................... 30 0 1 1.00 1 1
..................................................................................................................................................CGGTCCGACAAGTCCTTAAAAAAAT................................................ 25 0 1 1.00 1 1
..........................................................................................................................................................CAAGTCCTTAAAAAAATTTCGAT.......................................... 23 0 1 1.00 1 1
.....................................................................................................................................................TCCGACAAGTCCTTAAAAAATTTTCGAT.......................................... 28 1 1 1.00 1 1
..................................................................................................................................................CGGTCCGACAAGTCCT......................................................... 16 0 5 0.20 1 1

Generated: 09/01/2015 at 11:38 AM