ID:

eca-mir-9106

 Coordinate:

chr11:4187516-4187634 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.1 -46.1 -45.4

Sense Strand Reads

GGATTGCCTGGAAAGCACTCTAGAAGAGTCACTCCAAACAAAGTTTCCTTCAGACCTCAAGGTGTCCATTCTCCTGGACTTCACGCGAGGCTCTCGAGGTAGGGCTGACACTCTCCCCGGCCCTGATTCTCCCTCTTTCAGAGCCTCCGTTTTAGGAATTACACTGTTGCCTCCCCGGTCCTCAGGCAGAGGCAAGGCCATTTAAGACCGTCCAGGCTG

***********************************.................((((...(((((.......(((((((....(((.((((((((.((((((((((((..........))))))))......))))....))))))))))))))))))..........)))))....))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................TAGAAGAGTCACTCCAAACAAAGTTTCCTT......................................................................................................................................................................... 30 0 1 3.00 3 3
................................................TTCAGACCTCAAGGTGTCCATTCTCCTGG.............................................................................................................................................. 29 0 1 2.00 2 2
.................................................TCAGACCTCAAGGTGTCCATTCTCCTGGACT........................................................................................................................................... 31 0 1 1.00 1 1
....................................................................TTCTCCTGGACTTCACGCGAGGCTCTCGATT........................................................................................................................ 31 2 1 1.00 1 1
....................................................................TTCTCCTGGACTTCACGCGAGGCTCA............................................................................................................................. 26 1 1 1.00 1 1
................................TCCAAACAAAGTTTCCTTCAGACCTCAAG.............................................................................................................................................................. 29 0 1 1.00 1 1
.......................................................................TCCTGGACTTCACGCGAGGCTGTCGA.......................................................................................................................... 26 1 1 1.00 1 1
.....................................................................TCTCCTGGACTTCACGCGAGGCTCTCGA.......................................................................................................................... 28 0 1 1.00 1 1
.....................................................................TCTCCTGGACTTCACGCGAGGCTCTCGTA......................................................................................................................... 29 2 1 1.00 1 1
....................TAGAAGAGTGACTCCAAACAAAGTT.............................................................................................................................................................................. 25 1 1 1.00 1 1
....................................................................TTCTCCTGGACTTCACGCGAGGCTCTCT........................................................................................................................... 28 1 1 1.00 1 1
.......................................................................TCCTGGACTTCACGCGAGGCTCTC............................................................................................................................ 24 0 1 1.00 1 1
................................................TTCAGACCTCAAGGTGTCCATTCTCCTGGACTT.......................................................................................................................................... 33 0 1 1.00 1 1
................................................................................TCACGCGAGGCTCTCGAGGTAGAAAT................................................................................................................. 26 3 1 1.00 1 1
...TTGCCTGGAAAGCACTCTAGAAGAGTCACTC......................................................................................................................................................................................... 31 0 1 1.00 1 1
................................................................TCCATTCTCCTGGACTTCACGCGAGGCTC.............................................................................................................................. 29 0 1 1.00 1 1
....................................................................TTCTCCTGGACTTCACGCGAGGCTCTCGAGT........................................................................................................................ 31 1 1 1.00 1 1
..................TCTAGAAGAGTCACTCCAAACAAAGTTTCCTT......................................................................................................................................................................... 32 0 1 1.00 1 1

Anti-sense strand reads

CCTAACGGACCTTTCGTGAGATCTTCTCAGTGAGGTTTGTTTCAAAGGAAGTCTGGAGTTCCACAGGTAAGAGGACCTGAAGTGCGCTCCGAGAGCTCCATCCCGACTGTGAGAGGGGCCGGGACTAAGAGGGAGAAAGTCTCGGAGGCAAAATCCTTAATGTGACAACGGAGGGGCCAGGAGTCCGTCTCCGTTCCGGTAAATTCTGGCAGGTCCGAC

***********************************.................((((...(((((.......(((((((....(((.((((((((.((((((((((((..........))))))))......))))....))))))))))))))))))..........)))))....))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:35 AM