ID:

eca-mir-9100

 Coordinate:

chr11:47178212-47178356 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.8 -32.8 -32.8

Sense Strand Reads

CAGAATTAACGATTTAGTCTGCTCTGGGAGACTGTAGGTTGCGGCACAGCTGCAGAGCTGGGTTTGGGAGGTTGGATGCAGCCCTGAGTATCATTTGTAGGTTGTCCTGTGGAAAAGCCCCGCCTGCCCCACGGTTCTTCCAGGACAAGTGGCTGCAGATCACTCAGGAAAGTTGTGTAATTCTTCTCTCAGCCAGATGACTAGACACCATCATTTTGGAGCCCCTGCAGAAGGCTTTGTGAGAG

*******************************************************************************...(((((((...((((((((.(((((((..((((.((((.............)))).)))))))))))....)))))))).))))))).............**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................................................................................TTCCAGGACAAGTGGCTGCAGATCACTCATT............................................................................. 31 2 1 3.00 3 3
..............................................................................................TTGTAGGTTGTCCTGTGGAAAAGCCCCGCC......................................................................................................................... 30 0 1 3.00 3 3
.............................................................................................TTTGTAGGTTGTCCTGTGGAAAAGCCCCGC.......................................................................................................................... 30 0 1 2.00 2 2
....................................................................................TGAGTATCATTTGTAGGTTGTCCTGTGGA.................................................................................................................................... 29 0 1 2.00 2 2
.........................................................................................................................................TTCCAGGACAAGTGGCTGCAGATCACTCA............................................................................... 29 0 1 2.00 2 2
.........................................................................................ATCATTTGTAGGTTGTCCTGTGGAAAAGCC.............................................................................................................................. 30 0 1 2.00 2 2
.........................................................................................................................................TTCCAGGACAAGTGGCTGCAGATCACTCT............................................................................... 29 1 1 2.00 2 2
.........................................................................................................................................TTCCAGGACAAGTGGCTGCAGATCACTC................................................................................ 28 0 1 2.00 2 2
.......................................................................................................................................TCTTCCAGGACAAGTGGCTGCAGATCACTCT............................................................................... 31 1 1 2.00 2 2
.........................................................................................................................................TTCCAGGACAAGTGGCTGCAGATCAC.................................................................................. 26 0 1 2.00 2 2
..........................................................................................TCATTTGTAGGTTGTCCTGTGGAAAAGCCCTT........................................................................................................................... 32 2 1 1.00 1 1
.............................................................................................TTTGTAGGTTGTCCTGTGGAAAAGCCCCGCCT........................................................................................................................ 32 0 1 1.00 1 1
.......................................................................................................................................TCTTCCAGGACAAGTGTCTGCAGATCACTCT............................................................................... 31 2 1 1.00 1 1
.................................................................................................TAGGTTGTCCTGTGGAAAAGCCCCGCC......................................................................................................................... 27 0 1 1.00 1 1
..........................................................................................................................................TCCAGGACAAGTGGCTGCAGATCACTCATT............................................................................. 30 2 1 1.00 1 1
.....................................................................................GAGTATCATTTGTAGGTTGTCCTGTGGAA................................................................................................................................... 29 0 1 1.00 1 1
.............................................................................................TTTGTAGGTTGTCCTGTGGAAAAGCC.............................................................................................................................. 26 0 1 1.00 1 1
..........................GGAGACTGTAGGTTGCGGCACAGCTGCAGT............................................................................................................................................................................................. 30 1 1 1.00 1 1
......................................................................................................................................TTCTTCCAGGACAAGTGGCTGCAGATCACTCT............................................................................... 32 1 1 1.00 1 1
.........................................................................................................................................TTCCAGGACAAGTGGCTGCAGATCACTCTC.............................................................................. 30 2 1 1.00 1 1
........................................................................................TATCATTTGTAGGTTGTCCTGTGGAA................................................................................................................................... 26 0 1 1.00 1 1
....................................................................................TGAGTATCATTTGTAGGTTGTCC.......................................................................................................................................... 23 0 1 1.00 1 1
.......................................................................................................................................TCTTCCAGGACAAGTGGCTGCAGATCACTC................................................................................ 30 0 1 1.00 1 1
..........................................................................................TCATTTGTAGGTTGTCCTGTGGAAAAGCCT............................................................................................................................. 30 1 1 1.00 1 1
....................................................................................TGAGTATCATTTGTAGGTTGTCCTGTG...................................................................................................................................... 27 0 1 1.00 1 1

Anti-sense strand reads

GTCTTAATTGCTAAATCAGACGAGACCCTCTGACATCCAACGCCGTGTCGACGTCTCGACCCAAACCCTCCAACCTACGTCGGGACTCATAGTAAACATCCAACAGGACACCTTTTCGGGGCGGACGGGGTGCCAAGAAGGTCCTGTTCACCGACGTCTAGTGAGTCCTTTCAACACATTAAGAAGAGAGTCGGTCTACTGATCTGTGGTAGTAAAACCTCGGGGACGTCTTCCGAAACACTCTC

****************************************************************...(((((((...((((((((.(((((((..((((.((((.............)))).)))))))))))....)))))))).))))))).............******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................................CGGGACTCATAGTAAACATCCAACAGGAC........................................................................................................................................ 29 0 1 1.00 1 1
..................................................................................................................................................................................................................AAAAAAACCTCGGGGCCGTCTT............. 22 3 7 0.14 1 1

Generated: 09/01/2015 at 11:36 AM