ID:

eca-mir-9096

 Coordinate:

chr11:50837068-50837212 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-68.5 -68.5 -68.2

Sense Strand Reads

TGGAGGAGAGCGGGGTGGTGGAGAGGGCAGTACATGCTGGGTCACTGAAGAAGGGCACGAGGTTGAAGGACCTAGGGAGCTGCACAGCGGGGCCAGGTGGCAGGGAAAGAGTCGCAGCTGTGCCCCTGCCTCGTCTTGTCGCCCTGGAACCTCTCATGTGCAAACCGAGGACCTTGTAGGTGACCTCACGGGCCCATTCTGGGTTGGACAGCGAGGCCTTGACTGCTGGGGAAGGAAATGATAGA

***********************************.....((((((..((((((((..(((((((((((.(((.((....((((((..(((((((((((((((((...(((..((((........))))))).)))))))).)))))..))))...))))))..)).))).)))).....)))))))....)))).)))).)))..))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.............................................................................................................................................CCCTGGAACCTCTCATGTGCAAACCGAGG........................................................................... 29 0 1 3.00 3 3
.........................................................................................................................................................TCATGTGCAAACCGAGGACCTTGTAGGTGT.............................................................. 30 1 1 2.00 2 2
....................................................................................................................................................................................................TTCTGGGTTGGACAGCGAGGCCTTGACTGA................... 30 1 1 2.00 2 2
..................................................................................................................................TCGTCTTGTCGCCCTGGAACCTCTCATGTT..................................................................................... 30 1 1 2.00 2 2
............................................................................................................................................................TGTGCAAACCGAGGACCTTGTAGGTGAAA............................................................ 29 2 1 2.00 2 2
....................................................................................................................................................................................................TTCTGGGTTGGACAGCGAGGCCTTGACTGC................... 30 0 1 2.00 2 2
...............................................................TGAAGGACCTAGGGAGCTGCACAGCGA........................................................................................................................................................... 27 1 1 2.00 2 2
.....................................................................................................................................TCTTGTCGCCCTGGAACCTCTCATGTAA.................................................................................... 28 2 1 2.00 2 2
............................................................................................................................................................TGTGCAAACCGAGGACCTTGTAGGTGACC............................................................ 29 0 1 1.00 1 1
............................................................................................................................................................TGTGCAAACCGAGGACCTTGTAGGTGACCTT.......................................................... 31 1 1 1.00 1 1
..................................................................................................................................TCGTCTTGTCGCCCTGGAACCTCTCA......................................................................................... 26 0 1 1.00 1 1
.............................................................................................................................................CCCTGGAACCTCTCATGTGCAAACCGAGGA.......................................................................... 30 0 1 1.00 1 1
.......................................................................................................................................TTGTCGCCCTGGAACCTCTCATGTGCAAA................................................................................. 29 0 1 1.00 1 1
..............................TACATGCTGGGTCACTGAAGAAGGGCACG.......................................................................................................................................................................................... 29 0 1 1.00 1 1
.....................................................................................................................................TCTTGTCGCCCTGGAACCTCTCATGTGCAA.................................................................................. 30 0 1 1.00 1 1
.....................................................................................................................................TCTTGTTGCGCTGGAACCTCTCATGTGC.................................................................................... 28 2 1 1.00 1 1
.......................................................................................................................................TTGTCGCCCTGGAACCTCTCATGTGCAAACCGTT............................................................................ 34 2 1 1.00 1 1
.....................................................................................................................................TCTTGTCGCCCTGGAACCTCTCATGTGC.................................................................................... 28 0 1 1.00 1 1
..................................................................................................................................TCGTCTAGTTGCCCTGGAACCTCTCATGTG..................................................................................... 30 2 1 1.00 1 1
....................................................................................................................................................................................................TTCTGGGTTGGAAAGCGAGGCCTTGACTGT................... 30 2 1 1.00 1 1
.......................................................................................................................................TTGTCGCCCTGGAACCTCTCATGTGCAAACT............................................................................... 31 1 1 1.00 1 1
.....................................................................................................................................TCTTGTCGCCCTGGAACCTCTCATGTGCTT.................................................................................. 30 2 1 1.00 1 1
..............................TACATGCTGGGTCACTGAAGAAGGGCAC........................................................................................................................................................................................... 28 0 1 1.00 1 1
.....................................................................................................................................TCTTGTCGCCCTGGAACCTCTCATGGGCAA.................................................................................. 30 1 1 1.00 1 1
.....................................................................................................................................TCTTGTCGCCCTGGAACCTCTCATG....................................................................................... 25 0 1 1.00 1 1
.....................................................................................................................................TCTTGTCGCCCTGGAACCTCTCATGTA..................................................................................... 27 1 1 1.00 1 1

Anti-sense strand reads

ACCTCCTCTCGCCCCACCACCTCTCCCGTCATGTACGACCCAGTGACTTCTTCCCGTGCTCCAACTTCCTGGATCCCTCGACGTGTCGCCCCGGTCCACCGTCCCTTTCTCAGCGTCGACACGGGGACGGAGCAGAACAGCGGGACCTTGGAGAGTACACGTTTGGCTCCTGGAACATCCACTGGAGTGCCCGGGTAAGACCCAACCTGTCGCTCCGGAACTGACGACCCCTTCCTTTACTATCT

***********************************.....((((((..((((((((..(((((((((((.(((.((....((((((..(((((((((((((((((...(((..((((........))))))).)))))))).)))))..))))...))))))..)).))).)))).....)))))))....)))).)))).)))..))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:37 AM