ID:

eca-mir-9090

 Coordinate:

chr10:16382481-16382625 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.5 -38.8 -38.8

Sense Strand Reads

CTCACCACGGGCTCTGAGGAGCCGGAATGTTCCGGTGGAGTCTGCCAAGCCAGGCAGCCCCGAGAGTTGGGTTGAGAGTGGCTCCCTGAGCACTGCGGCTGTGGTCAGCTCTAAGGCCTTGTCGGCAGGCTGAGATTTCAGAGCCTGACAACCCTGTGGACTTAGGATAGCAGAGACCCACCTCTCCCCGCATCCATCTCCCCCTCCGCCTTCCTCCACTTCCTCCAACCCAAAGCGGGGCCCCC

****************************************************.......((..(((((((((((.....(((((.((.(((.(((((((...((((........))))..))).))))))).))......)))))...))))))....))))).))...**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................................................TGAGATTTCAGAGCCTGACAACCC........................................................................................... 24 0 1 4.00 4 4
..................................................................................................................................TGAGATTTCAGAGCCTGACAACCCTGTGGTT.................................................................................... 31 2 1 2.00 2 2
..................................................................................................................................TGAGATTTCAGAGCCTGACAACCCTGT........................................................................................ 27 0 1 2.00 2 2
..................................................................................................................................TGAGATTTCAGAGCCTGACAACC............................................................................................ 23 0 1 2.00 2 2
...................................................................................................................................................ACAACCCTGTGGACTTAGGATAGCA......................................................................... 25 0 1 2.00 2 2
...................................................................TGGGTTGAGAGTGGCTCCCTGAGCAC........................................................................................................................................................ 26 0 1 2.00 2 2
.......................................................................................................GTCAGCTCTAAGGCCTTGTCGGCAGGC................................................................................................................... 27 0 1 1.00 1 1
..................................................................TTGGGTTGAGAGTGGCTCCCTGAGCACT....................................................................................................................................................... 28 0 1 1.00 1 1
..................................................................................................................................TGAGATTTCAGAGCCTGACAACCCTGTG....................................................................................... 28 0 1 1.00 1 1
..................................................................................................................................TGAGATTTCAGAGCCTGACAAACCTGTGGAC.................................................................................... 31 1 1 1.00 1 1
.......................................................................................................................................................CCCTGTGGACTTAGGATAGCAGAGACCT.................................................................. 28 1 1 1.00 1 1
........................................................................................................TCAGCTCTAAGGCCTTGTCGGCAG..................................................................................................................... 24 0 1 1.00 1 1
..................................................................................................................................TGAGATTTCAGAGCCTGACAACCCTGTGGAC.................................................................................... 31 0 1 1.00 1 1
..................................................................................................................................TGAGATTTCAGAGCCTGACAAC............................................................................................. 22 0 1 1.00 1 1
..................................................................................................................................TGAGATTTCAGAGCGTAACAACCCTGTGGAC.................................................................................... 31 2 1 1.00 1 1
..........................................................................................................................................................TGTGGACTTAGGATAGCAGAGACCCACCT.............................................................. 29 0 1 1.00 1 1
..................................................................................................................................................................TAGGATAGCAGAGACCCACCTCT............................................................ 23 0 1 1.00 1 1

Anti-sense strand reads

GAGTGGTGCCCGAGACTCCTCGGCCTTACAAGGCCACCTCAGACGGTTCGGTCCGTCGGGGCTCTCAACCCAACTCTCACCGAGGGACTCGTGACGCCGACACCAGTCGAGATTCCGGAACAGCCGTCCGACTCTAAAGTCTCGGACTGTTGGGACACCTGAATCCTATCGTCTCTGGGTGGAGAGGGGCGTAGGTAGAGGGGGAGGCGGAAGGAGGTGAAGGAGGTTGGGTTTCGCCCCGGGGG

****************************************************************************.......((..(((((((((((.....(((((.((.(((.(((((((...((((........))))..))).))))))).))......)))))...))))))....))))).))...**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...........................................................................................................................................TCTCGGACTGTTGGGACACCTGAATCCT.............................................................................. 28 0 1 1.00 1 1

Generated: 09/01/2015 at 11:33 AM