ID:

eca-mir-9089-1

 Coordinate:

chr10:26190930-26191044 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.4 -38.4 -38.3
mature

  1. eca-mir-9089-1  chr10:26190995-26191022 +
  2. eca-mir-9089-2  chr10:26231013-26231040 +
star

  1. eca-mir-9089-1  chr10:26190961-26190989 +
  2. eca-mir-9089-2  chr10:26230979-26231007 +

Sense Strand Reads

ATGCCATTTGCCACCAGTTAGACACTCGCTTCACCGGCATTTATCTTCCATCAGCTTGTTGGCAGGAGTGGAGGATGAGGATCCACCTTCTGAGCAGGGTCTTTCTGTGGGTGTGTCACAGACAAGAACTCCCAGGGTGGGTCCTTCCACCCAGATGGCTCAGCCCTGTGGCATGTGCAGCCTGGTCTTGAAAGACACTTTTGCACCTGGCTGAG

******************************************************************.(((((.....((((((((((((.......((((((((((((((.....))))))).))))...))))))))))))))))))))........********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................................TCACAGACAAGAACTCCCAGGGTGGGTC........................................................................ 28 0 2 1.00 2 2
.....................................CATTTATCTTCCATCAGCTTGTTGGCAGG..................................................................................................................................................... 29 0 2 1.00 2 2
...................................................................................................................TCACAGACAAGAACTCCCAGGGTGGGTCC....................................................................... 29 0 2 0.50 1 1
..................TAGACACTCACTTCACCGGCATTTATC.......................................................................................................................................................................... 27 1 2 0.50 1 1
......................................................................................................................................................................TGTGACATGTGCAGCCTGGTCTTGAAAGAC................... 30 1 2 0.50 1 1
....................................................TGCTTGTTGGCAGGAGTGGAGCATGAGGAT..................................................................................................................................... 30 2 2 0.50 1 1
...............................................................................................................TGTGTCACAGACAAGAACTCCCAGGGTGGGT......................................................................... 31 0 2 0.50 1 1
....................................................................................................................CACAGACAAGAACTCCCAGGGTGGGTCC....................................................................... 28 0 2 0.50 1 1
.................................................................................TCCACCTTCTGAGCAGGGTCTTTCTGTGG......................................................................................................... 29 0 2 0.50 1 1
...............................................................................................................TGTGTCACAGACAAGAACTCCCAGGGA............................................................................. 27 1 2 0.50 1 1
......TTTGCCACCAGTTAGACACTCACTTC....................................................................................................................................................................................... 26 1 2 0.50 1 1
.........................................................................GATGAGGATCCACCTTCTGAGAAGGGTCT................................................................................................................. 29 1 2 0.50 1 1
.....................................................................................................................ACAGACAAGAACTCCCAGGGTGGGT......................................................................... 25 0 2 0.50 1 1
................................ACCGGCATTTATCTTCCATCAGCT............................................................................................................................................................... 24 0 2 0.50 1 1
...........................................................TGGCAGGAGTGGAGGATGAGGATCCACC................................................................................................................................ 28 0 2 0.50 1 1
...........................................................TGGCAGGAGTGGAGGATGAGGATCC................................................................................................................................... 25 0 2 0.50 1 1
............................................................................................................................................................................................TGAAAGACACTTTTGCACCTGGCTG.. 25 0 2 0.50 1 1
...................................................................................................................TCACAGACAAGAACTCCCAGGGTTTT.......................................................................... 26 3 5 0.20 1 1

Anti-sense strand reads

TACGGTAAACGGTGGTCAATCTGTGAGCGAAGTGGCCGTAAATAGAAGGTAGTCGAACAACCGTCCTCACCTCCTACTCCTAGGTGGAAGACTCGTCCCAGAAAGACACCCACACAGTGTCTGTTCTTGAGGGTCCCACCCAGGAAGGTGGGTCTACCGAGTCGGGACACCGTACACGTCGGACCAGAACTTTCTGTGAAAACGTGGACCGACTC

*********************************************************.(((((.....((((((((((((.......((((((((((((((.....))))))).))))...))))))))))))))))))))........****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:35 AM