ID:

eca-mir-9088

 Coordinate:

chr10:13989304-13989436 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.6 -44.5 -44.4
mature

  1. chr10:12957029-12957049 +
  2. chr10:13397322-13397342 -
  3. eca-mir-9088  chr10:13989395-13989415 +
  4. chrUn:56910118-56910138 -
star

  1. chr10:12956980-12956998 +
  2. chr10:13247119-13247137 -
  3. eca-mir-9088  chr10:13989344-13989362 +
  4. chrUn:56910168-56910186 -

Sense Strand Reads

CCACGCGCGGCCCGCAGGGAGGAGCGGCGGTAGAGGGAGGGGCGCGTGCCTGTGAAAAGGCGGGAAACAGGCGACGCTCGAGGCTCGCGCATGCGCACACAGTCAACTGCGTCTCGGGCGCCTGAGGGGAAGCGGCCTGGTCTGTGGCGGCGCTGTGGAGAGGGCGTCCCTCGAGCCTGGGTTCTGGAGGCCTGAAGAAACAGCTCTTCATCGTCAGCGCCGGAAAAAGCAGA

***************************************************************************(((((((((((.((((.((((.((((((((.((((..(((((....))))).....))))..))).)))))...)))))))))))........)))))))).******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............................................................................................................................................................................................CCTGAAGAAACAGCTCTTCATCGTCAGCGC............. 30 0 1 1.00 1 1
..................................................................................................................................................................................................AAGAAACAGCTCTTCATCGTCAGCGCC............ 27 0 2 0.50 1 1
.............................................................................................................................................CTGTGGCGGCGCTGTGGAGAG....................................................................... 21 0 4 0.25 1 1
.........................................................................................................................................TGGTCTGTGGCGGCGCTGTGGAGA........................................................................ 24 0 4 0.25 1 1
............................................................................................................................................................................................................TCTTCATCGTCAGCGCCGGAAAAGGCCT. 28 3 4 0.25 1 1
..........................................................................................ATGCGCACACAGTCAACTG............................................................................................................................ 19 0 4 0.25 1 1

Anti-sense strand reads

GGTGCGCGCCGGGCGTCCCTCCTCGCCGCCATCTCCCTCCCCGCGCACGGACACTTTTCCGCCCTTTGTCCGCTGCGAGCTCCGAGCGCGTACGCGTGTGTCAGTTGACGCAGAGCCCGCGGACTCCCCTTCGCCGGACCAGACACCGCCGCGACACCTCTCCCGCAGGGAGCTCGGACCCAAGACCTCCGGACTTCTTTGTCGAGAAGTAGCAGTCGCGGCCTTTTTCGTCT

********************************************************(((((((((((.((((.((((.((((((((.((((..(((((....))))).....))))..))).)))))...)))))))))))........)))))))).*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:34 AM