ID:

eca-mir-9086

 Coordinate:

chr10:24329439-24329551 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

GTTGGGTCTGAGGGAGGAGGGGGCTGGGGGCCTGGACTCAGATCCTGAAGGGGCTGGATCCTGAGTCCCGGGCCCCTTGTCTGACCTCTCTCCCTGCAGGGTGTGACTCTGACGGACCTGAAGGAAGCAGAGAAGGCCGCAGGGAAGGCCCCAGAGCCAGAAAAGTCGGGCCTGCAGAGCCTGGTGAGAGGGGTCAGGTGATCGGGCAGTGGG

***********************************.......((......(((((.(((.(((..((..(((((((((((((...((((((.(((.((((.(((.......)))..)))).))).)).))))..))..))))))..)))))..))..)))....))).)))))...))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
............................................................................TTGTCTGACCTCTCTCCCTGCAGAA................................................................................................................ 25 2 1 3.00 3 3
............................................................................................CACACAGGGTGTGACTCTGACGGACCT.............................................................................................. 27 3 1 2.00 2 2
.............................................................................................ACACAGGGTGTGACTCTGACGGACCTGAAGG......................................................................................... 31 3 1 2.00 2 2
...........................................................................CTTGTCTGACCTCTCTCCCTGCAGAG................................................................................................................ 26 1 1 2.00 2 2
...........................................................................CTTGTCTGACCTCTCTCCCTGCAGA................................................................................................................. 25 1 1 2.00 2 2
............................................................................TTGTCTGACCTCTCTCCCTGCAGA................................................................................................................. 24 1 1 2.00 2 2
.........................................................................................................................................................GAGCCAGAAAAGTCGGGCCTGCAGAGCCTGT............................. 31 1 1 2.00 2 2
...........................................................................................................................................................GCCAGAAAAGTCGGGCCTGCAGAGCCTGGAT........................... 31 2 1 1.00 1 1
.............................................................................................................TGACGGACCTGAAGGAAGCAGAGAAA.............................................................................. 26 1 1 1.00 1 1
..........................................................................................................................................................AGCCAGAAAAGTCGGGCCTGCAGAGCCTGTT............................ 31 1 1 1.00 1 1
.............................................................................................................TGACGGACCTGGAGGAAGCAGAGAAG.............................................................................. 26 1 1 1.00 1 1
.............................................................................................................TGACGGACCTGAAGGAAGCAGAGAAGT............................................................................. 27 1 1 1.00 1 1
............................................................................TTGTCTGACCTCTCTCCCTGCAGAGA............................................................................................................... 26 2 1 1.00 1 1
............................................................................................CACACAGGGTGTGACTCTGACGGACC............................................................................................... 26 3 1 1.00 1 1
............................................................................................................................................................CCAGAAAAGTCGGGCCTGCAGAGCCTGGT............................ 29 0 1 1.00 1 1
...........................................................................CTTGTCTGACCTCTCTCCCTGCAGAA................................................................................................................ 26 2 1 1.00 1 1
............................................................................ATGTCTGACCTCTCTCCCTGCAGAA................................................................................................................ 25 3 2 0.50 1 1

Anti-sense strand reads

CAACCCAGACTCCCTCCTCCCCCGACCCCCGGACCTGAGTCTAGGACTTCCCCGACCTAGGACTCAGGGCCCGGGGAACAGACTGGAGAGAGGGACGTCCCACACTGAGACTGCCTGGACTTCCTTCGTCTCTTCCGGCGTCCCTTCCGGGGTCTCGGTCTTTTCAGCCCGGACGTCTCGGACCACTCTCCCCAGTCCACTAGCCCGTCACCC

***********************************.......((......(((((.(((.(((..((..(((((((((((((...((((((.(((.((((.(((.......)))..)))).))).)).))))..))..))))))..)))))..))..)))....))).)))))...))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:34 AM