ID:

eca-mir-9078

 Coordinate:

chr3:118350892-118351036 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-57.0 -56.9 -56.8

Sense Strand Reads

GCCTTCCCCCTTCATTTTGGGTTTGTTTTTATTGTCCTGGACTTTATTTATTGCTGCTGAAATGAAGGTCCGGGTGCGGGTGTAACAGACGGTGGGTCTAGAGATGTGAGGGTTTTGTGTGACGAGGTTGTACGAGGCTGTGCTGCATCAGGGCTTGGCCGGCGCGCTCCCTCCCTGTGCGTTCTTGGGGGCACTCCTCTGTTTCCAGAAGCCTGCGGTGTCTACGCCTGCTTCAAAATGAAACA

***********************************((((((((...((((((........))))))))))))))............((((.....)))).((((((.(((((....((((..(((((.(((((((((..((((.((.....(((...))).))))))..))))...))))).)))))...))))))))))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................................................................................TGACGAGGTTGTACGAGGCTGTGCTGC................................................................................................... 27 0 1 4.00 4 4
...................................................................................................................TGTGTGACGAGGTTGTACGAGGCTGTGCTT.................................................................................................... 30 1 1 4.00 4 4
..................................................................................................................................TACGAGGCTGTGCTGCATCAGGGCTTGGC...................................................................................... 29 0 1 3.00 3 3
.........................TTTTTATTGTCCTGGACTTTATTTATTGCT.............................................................................................................................................................................................. 30 0 1 3.00 3 3
...........TCATTTTGGGTTTGTTTTTATTGTCCTGGA............................................................................................................................................................................................................ 30 0 1 2.00 2 2
..................................................................................................................TTGTGTGACGAGGTTGTACGAGGCT.......................................................................................................... 25 0 1 2.00 2 2
.................TGGGTTTGTTTTTATTGTCCTGGACT.......................................................................................................................................................................................................... 26 0 1 2.00 2 2
.....................................................................................................................TGTGACGAGGTTGTACGAGGCTGTGCTT.................................................................................................... 28 1 1 2.00 2 2
..................................................................................................................................TACGAGGCTGTGCTGCATCAGGGC........................................................................................... 24 0 1 2.00 2 2
..................................................................................................................................TACGAGGCTGTGCTGCATCAGGGCT.......................................................................................... 25 0 1 2.00 2 2
..........................TTTTATTGTCCTGGACTTTATTTATTGCT.............................................................................................................................................................................................. 29 0 1 2.00 2 2
............................TTATTGTCCTGGACTTTATTTATTGCTGCTT.......................................................................................................................................................................................... 31 1 1 1.00 1 1
..................................................................................................TAGAGATGTGAGGGTTTTGTGTGACGAGGT..................................................................................................................... 30 0 1 1.00 1 1
.......................................................................................................................TGACGAGGTTGTACGAGGCTGTGCTGCAT................................................................................................. 29 0 1 1.00 1 1
........................................................................................................................GACGAGGTTGTACGAGGCTGTGCT..................................................................................................... 24 0 1 1.00 1 1
.........................................................................................................................................CTGTGCTGCATCAGGGCTTGGCCGGAAT................................................................................ 28 3 1 1.00 1 1
..............................................TTTATTGCTGCTGAAATGAAGGTCCGGGTG......................................................................................................................................................................... 30 0 1 1.00 1 1
...............................................................................................................................................TGCATCAGGGCTTGGCCGGCGCGCTC............................................................................ 26 0 1 1.00 1 1
..................................................................................................................................TACGAGGCTGTGCTGCATCAGGT............................................................................................ 23 1 1 1.00 1 1
..........................................................................................................................CGAGGTTGTACGAGGCTGTGCTGCATC................................................................................................ 27 0 1 1.00 1 1
..................................................................................................................................TACGAGGCTGTGCTGCATCAGGGCATT........................................................................................ 27 2 1 1.00 1 1
................................................................................................................TTTTGTGTGACGAGGTTGTACGAGGCTGTT....................................................................................................... 30 1 1 1.00 1 1
.......................................................................................................................TGACGAGGTTGTACGAGGCAGTGCTGT................................................................................................... 27 2 1 1.00 1 1
............................................TATTTATTGCTGCTGAAATGAAGGTCCGGGT.......................................................................................................................................................................... 31 0 1 1.00 1 1
........................................................................................................................GACGAGGTTGTACGAGGCTGTGCTGCATC................................................................................................ 29 0 1 1.00 1 1
..................................................................................................................................TACGAGGCTGTGCTGCATCAGGGCTTGGCT..................................................................................... 30 1 1 1.00 1 1
.....................................................................................................................TGTGACGAGGTTGTACGAGGCTGGGCTGTT.................................................................................................. 30 3 1 1.00 1 1
......................................................................................................................GTGACGAGGTTGTACGAGGCTGTGCTGCATTA............................................................................................... 32 1 1 1.00 1 1
..................................................................................................TAGAGATGTGAGGGTTTTGTGTGACGAGT...................................................................................................................... 29 1 1 1.00 1 1
.....................................................................................................................TGTGACGAGGTTGTACGAGGCTGTGC...................................................................................................... 26 0 1 1.00 1 1
..........TTCATTTTGGGTTTGTTTTTATTGTCCTGGA............................................................................................................................................................................................................ 31 0 1 1.00 1 1
.......................................................................................................................................................................................................TGTTTCCAGAAGCCTGCGGTGTCTACGC.................. 28 0 1 1.00 1 1
..........TTCATTTTGGGTTTGTTTTTATTGTCCTGG............................................................................................................................................................................................................. 30 0 1 1.00 1 1
.......................................................................................................................TGACGAGGTTGTACGAGGCTGTGCTGCATT................................................................................................ 30 1 1 1.00 1 1
..................................................................................................TAGAGATGTGAGGGTTTTGTGTGAATT........................................................................................................................ 27 3 1 1.00 1 1
..............................................TTTATTGCTGCTGAAATGAAGGTCCGGGT.......................................................................................................................................................................... 29 0 1 1.00 1 1
..................................................................................................TAGAGATGTGAGGGTTTTGTGTGAC.......................................................................................................................... 25 0 1 1.00 1 1
...................................................................................................................TGTGTGACGAGGTTGTACGAGGCTGTGCT..................................................................................................... 29 0 1 1.00 1 1
.......................................................................................................................TGACGAGGTTGTACGAGGCTGTGCT..................................................................................................... 25 0 1 1.00 1 1
.......................................................................................................................TGACGAGGTTGTACGAGGCTGTGCTG.................................................................................................... 26 0 1 1.00 1 1
.................................................................................................................TTTGTGTGACGAGGTTGTACGAGGCTGTGCT..................................................................................................... 31 0 1 1.00 1 1
.....................................................................................................................TGTGACGAGGTTGTACGAGGCTGTGCTGC................................................................................................... 29 0 1 1.00 1 1
..........................................................................................................................................................................................................TTCCAGAAGCCTGCGGTGTCTACGCCT................ 27 0 1 1.00 1 1
...............TTTGGGTTTGTTTTTATTGTCCTGGACT.......................................................................................................................................................................................................... 28 0 1 1.00 1 1
.......................................................................................................................TGACGAGGTTGTACGAGGCTGTGCTTT................................................................................................... 27 2 1 1.00 1 1
...........TCATTTTGGGTTTGTTTTTATTGTCCTGGACT.......................................................................................................................................................................................................... 32 0 1 1.00 1 1
.................TGGGTTTGTTTTTATTGTCCTGGACTTT........................................................................................................................................................................................................ 28 0 1 1.00 1 1
.......................................................................................................................TGACGAGGTTGTACGAGGCGGTGCTGC................................................................................................... 27 1 1 1.00 1 1
...............................................TTATTGCTGCTGAAATGAAGGTCC.............................................................................................................................................................................. 24 0 1 1.00 1 1
.....................................................................................................................TGTGACGAGGTTGTACGAGGCTGTGCTGCT.................................................................................................. 30 1 1 1.00 1 1
.........CTTCATTTTGGGTTTGTTTTTATTGTCCT............................................................................................................................................................................................................... 29 0 1 1.00 1 1
............................................TATTTATTGCTGCTGAAATGAAGGTC............................................................................................................................................................................... 26 0 1 1.00 1 1
.......................................................................................................................TGACGAGGTTGTACGAGGCTGTGC...................................................................................................... 24 0 1 1.00 1 1
.....................................................................................................................TGTGACGAGGTTGTACGAGGCTGTGCTA.................................................................................................... 28 1 1 1.00 1 1
..................................TCCTGGACTTTATTTATTGCTGCTGAAA....................................................................................................................................................................................... 28 0 1 1.00 1 1

Anti-sense strand reads

CGGAAGGGGGAAGTAAAACCCAAACAAAAATAACAGGACCTGAAATAAATAACGACGACTTTACTTCCAGGCCCACGCCCACATTGTCTGCCACCCAGATCTCTACACTCCCAAAACACACTGCTCCAACATGCTCCGACACGACGTAGTCCCGAACCGGCCGCGCGAGGGAGGGACACGCAAGAACCCCCGTGAGGAGACAAAGGTCTTCGGACGCCACAGATGCGGACGAAGTTTTACTTTGT

***********************************((((((((...((((((........))))))))))))))............((((.....)))).((((((.(((((....((((..(((((.(((((((((..((((.((.....(((...))).))))))..))))...))))).)))))...))))))))))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................................................................................................AGTCCCGAACCGGCCT.................................................................................. 16 1 20 0.05 1 1

Generated: 09/01/2015 at 12:01 PM