ID:

eca-mir-9073

 Coordinate:

chr3:31596382-31596526 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-52.1 -51.5 -51.5

Sense Strand Reads

GATCACATGGATGAGGTTGAGTCTGCCTTCCTAAATAGGCTAAGAGCTGCGGAGGAGGGGCCTGAGCTTCCTCTTTGCCCTCATGAGCTCTGAGCCTGGCAGTGGGGGATGGTCCAAACAAGTCCGTGCATGAGTGAATGAGTCCCCACACGGAGGCTgtgcagcatgatggttagacgtgcaggttctggcctcagactccggggacagaacttccagctttccatcttcttttagctgtgtga

********************************************************((((((.((((((..(((..(((.(((((.((....(((((....(((((((((.((.((..((.((....)).))..)).))..)))))).)))..)))))..))..))))).))).))).....)))))).)))))).............************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.......................................................................TCTTTGCCCTCATGAGCTCTGAGCCTGGCA................................................................................................................................................ 30 0 1 12.00 12 12
......................................................................................................................................................................TGATGGTTAGACGTGCAGGTTCTGGCC.................................................... 27 0 1 6.00 6 6
..TCACATGGATGAGGTTGAGTCTGCCT......................................................................................................................................................................................................................... 26 0 1 6.00 6 6
............................................................................................................................................................................TTAGACGTGCAGGTTCTGGCCTCAGACT............................................. 28 0 1 5.00 5 5
.......................................................................TCTTTGCCCTCATGAGCTCTGAGCCTGGC................................................................................................................................................. 29 0 1 3.00 3 3
.......................................................................TCTTTGCCCTCATGAGCTCTGAGCCTGGCAT............................................................................................................................................... 31 1 1 3.00 3 3
..TCACATGGATGAGGTTGAGTCTGCCTTCCT..................................................................................................................................................................................................................... 30 0 1 3.00 3 3
................................................................................TCATGAGCTCTGAGCCTGGCAGTGGGGGT........................................................................................................................................ 29 1 1 2.00 2 2
............................................................................................................................................................................TTAGACGTGCAGGTTCTGGCCTCAGACTC............................................ 29 0 1 2.00 2 2
.......................................................................TCTTTGCCCTCATGAGCTCTGAGCCTGGCATT.............................................................................................................................................. 32 1 1 2.00 2 2
...............................................................................CTCATGAGCTCTGAGCCTGGCAGTGGGGGT........................................................................................................................................ 30 1 1 2.00 2 2
...............................TAAATAGGCTAAGAGCTGCGGAGGAGGGGT........................................................................................................................................................................................ 30 1 1 2.00 2 2
...............................TAAATAGGCTAAGAGCTGCGGAGGAGGGGC........................................................................................................................................................................................ 30 0 1 2.00 2 2
.............................................................................................................................................................................TAGACGTGCAGGTTCTGGCCTCAGACT............................................. 27 0 1 2.00 2 2
.......................................................................TCTTTGCCCTCATGAGCTCTGAGCCTGGCAA............................................................................................................................................... 31 1 1 2.00 2 2
................................................................................TCATGAGCTCTGAGCCTGGCAGTGGGGGTT....................................................................................................................................... 30 1 1 1.00 1 1
..................................................................................................................................TGAGTGAATGAGTCCCCACACGGAGGCTG...................................................................................... 29 0 1 1.00 1 1
..................................................................................................................................TGAGTGAATGAGTCCCCACACGGAGGCTGTT.................................................................................... 31 1 1 1.00 1 1
......................................................................................................................................................................................................CTCCGGGGACAGAACTTCCAGCTTTCCATC................. 30 0 1 1.00 1 1
.........................................................................................................................................................................TGGTTAGACGTGCAGGTTCTGGCC.................................................... 24 0 1 1.00 1 1
......ATGGATGAGGTTGAGTCTGCCTTCC...................................................................................................................................................................................................................... 25 0 1 1.00 1 1
...............................TAAATAGGCTAAGAGCTGCGGAGGAGG........................................................................................................................................................................................... 27 0 1 1.00 1 1
...CACATGGATGAGGTTGAGTCTGCCTTCC...................................................................................................................................................................................................................... 28 0 1 1.00 1 1
...................................TAGGCTAAGAGCTGCGGAGGAGGGGCCTA..................................................................................................................................................................................... 29 1 1 1.00 1 1
....................................................................................................................................................................................................GACTCCGGGGACAGAACTTCCAGCTTT...................... 27 0 1 1.00 1 1
.................................................................................................................................................................................................TCAGACTCCGGGGACAGAACTTCCAGCTT....................... 29 0 1 1.00 1 1
.......................................................................................................................................................................................................TCCGGGGACAGAACTTCCAGCTTTCA.................... 26 1 1 1.00 1 1
.......................................................................TCTTTGCCCTCATGAGCTCTGAGCCTGGTG................................................................................................................................................ 30 2 1 1.00 1 1
....................................................................................................................................................................................................GACTCCAGGGACAGAACTTACAGCTTTCCATC................. 32 2 1 1.00 1 1
.......................................................................TCTTTGCCCTCGTGAGCTCTGAGC...................................................................................................................................................... 24 1 1 1.00 1 1
............................................................................................................................................................................TTAGACGTGCAGGTTCTGGCCTCAGACTCT........................................... 30 1 1 1.00 1 1
................................................................................TCATGAGCTGTGAGCCTGGGAGTGGGGGG........................................................................................................................................ 29 3 1 1.00 1 1
................................................................................TCATGAGCTCTGAGCCAGGCAGTGGGGGTT....................................................................................................................................... 30 2 1 1.00 1 1
.......................................................................TCTTTGCCCTCATGAGCTCTGAGCCTGGGT................................................................................................................................................ 30 2 1 1.00 1 1
.......................................................................TCTTTGCCCTCATGAGCTCTGAGC...................................................................................................................................................... 24 0 1 1.00 1 1
..............................................................TGAGCTTCCTCTTTGCCCTCATGAGCTCTGAGCCT.................................................................................................................................................... 35 0 1 1.00 1 1
...............................TAAATAGGCTAAGAGCTGCGGAGGAGGGG......................................................................................................................................................................................... 29 0 1 1.00 1 1
.............................................................................................................................................................................TAGACGTGCAGGTTCTGGCCTCAGACTC............................................ 28 0 1 1.00 1 1
..................................................................................................................................................................................................CAGACTCCGGGGACAGAACTTCCAGCTTTCCATC................. 34 0 1 1.00 1 1
..TCACATGGATGAGGTTGAGTCTGCCTT........................................................................................................................................................................................................................ 27 0 1 1.00 1 1
....ACATGGATGAGGTTGAGTCTGCCTTCC...................................................................................................................................................................................................................... 27 0 1 1.00 1 1
.................................................................................................................................................................................................TCAGACTCCGGGGACAGAACTTCCAGCTTTC..................... 31 0 1 1.00 1 1
.......................................................................TCTTTGCCCTCATGAGCTCTGAGCCTGG.................................................................................................................................................. 28 0 1 1.00 1 1
..............................CTAAATAGGCTAAGAGCTGCGGAGGAGGGG......................................................................................................................................................................................... 30 0 1 1.00 1 1
....................................................................TCCTCTTTGCCCTCATGAGCTCTGAGCCT.................................................................................................................................................... 29 0 1 1.00 1 1

Anti-sense strand reads

CTAGTGTACCTACTCCAACTCAGACGGAAGGATTTATCCGATTCTCGACGCCTCCTCCCCGGACTCGAAGGAGAAACGGGAGTACTCGAGACTCGGACCGTCACCCCCTACCAGGTTTGTTCAGGCACGTACTCACTTACTCAGGGGTGTGCCTCCGAgtgGTgGTtgTtggttTgTGgtgGTggttGtggGGtGTgTGtGGggggTGTgTTGttGGTgGtttGGTtGttGttttTgGtgtgtgT

*************************************((((((.((((((..(((..(((.(((((.((....(((((....(((((((((.((.((..((.((....)).))..)).))..)))))).)))..)))))..))..))))).))).))).....)))))).)))))).............******************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:59 AM