ID:

eca-mir-9070

 Coordinate:

chr3:119160267-119160391 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.9 -33.8 -33.7

Sense Strand Reads

AGGGTTGTCTGCCACGTCTTTTCCGTGGTCTCTGTGACCAATGCAGCAACAGGGGCCACTGGATGGCTGGGTCACAGGTGGTACAAAGGATCAGCCATTCTTGGGCCGTTGGGCAACCACTGAGATGAGGCTGTGTTCCACAGGTGTGATGTTTACACTGGCCCTTCACCAGGCAGTGACCAGCCTGGCCACAGCCAAGCACTCTAGCACACGCATGTGGTGTGC

***************************************************************.((((((((((((.((((.(((......(((((..(((((((((....))).....))))))...)))))))).))))...)))))).......))))))..************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
........................................................................................................................TGAGATGAGGCTGTGTTCCACAGGTGTGAT........................................................................... 30 0 1 3.00 3 3
........................................................................................................................TGAGATGAGGCTGTGTTCCACAGGTGTGA............................................................................ 29 0 1 3.00 3 3
..............................................................................TGGTACAAAGGATCAGCCATTCTTGGGCC...................................................................................................................... 29 0 1 3.00 3 3
.............................................................................................................TGGGCAACCACTGAGATGAGGCTGTGTTCC...................................................................................... 30 0 1 2.00 2 2
........................................................................................................................TGAGATGAGGCTGTGTTCCACAGGTGTGATT.......................................................................... 31 1 1 2.00 2 2
...............................................................................................................................................................................................CAGCCAAGCACTCTAGCACACGCATGTGGTG... 31 0 1 2.00 2 2
.............................................................................................................TGGGCAGCCACTGAGATGAGGCTGTGTTCC...................................................................................... 30 1 1 1.00 1 1
.......TCTGCCACGTCTTTTCCGTGGTCTCTGTGACC.......................................................................................................................................................................................... 32 0 1 1.00 1 1
..............................TCTGTGACCAATGCAGCAACAGGGGCCT....................................................................................................................................................................... 28 1 1 1.00 1 1
................TCTTTTCCGTGGTCTCTGTGACCAATGCA.................................................................................................................................................................................... 29 0 1 1.00 1 1
.............................................................................................................TGGGCAACCACTGAGATGAGGCTGTGTTC....................................................................................... 29 0 1 1.00 1 1
.................................................................................TACAAAGGATCAGCCATTCTTGGGCCG..................................................................................................................... 27 0 1 1.00 1 1
........................................................................................................................TGAGATGAGGCTGTGTTCCACAGGTGTGAAATT........................................................................ 33 2 1 1.00 1 1
........................................................................................................................TGAGATGAGGCTGTGTTCCAT.................................................................................... 21 1 1 1.00 1 1
..............................................................................TGGTACAAAGGATCAGCCATTCTTGGGCCGT.................................................................................................................... 31 0 1 1.00 1 1
.................................................................................TACAAAGGATCAGCCATTCTTGGGCCGT.................................................................................................................... 28 0 1 1.00 1 1
........................................................................................................................TGAGATGAGGCTGTGTTCCACAGGT................................................................................ 25 0 1 1.00 1 1
.............................................................................................................TGGGCAACCACTGAGATGAGGCTGTGTTCT...................................................................................... 30 1 1 1.00 1 1
.......TCTGCCACGTCTTTTCCGTGGTCTCTGTGACT.......................................................................................................................................................................................... 32 1 1 1.00 1 1
.................................................................................................TTCTTGGGCCGTTGGGCAACCACTGAGATG.................................................................................................. 30 0 1 1.00 1 1
.................................................................................TACAAAGGATCAGCCATTCTTGGGCCGTT................................................................................................................... 29 0 1 1.00 1 1
..............................................................................TGGTACAAAGGAACAGCCATTCTTGGGCC...................................................................................................................... 29 1 1 1.00 1 1
.............ACGTCTTTTCCGTGGTCTCTGTGACCAATGCT.................................................................................................................................................................................... 32 1 1 1.00 1 1
................................................................................................................................................TGTGATGTTTACACTGGCCCTTCACCAGGAAA................................................. 32 2 1 1.00 1 1
........................................................................................................................TGAGATGAGGCTGTGTTCCACAGGTGTG............................................................................. 28 0 1 1.00 1 1
........................................................................................................................TGAGATGAGGCTGTGTTCCACAGG................................................................................. 24 0 1 1.00 1 1
........................................................................................................................................TCCACAGGTGTGATGTTTACACTGGCCCT............................................................ 29 0 1 1.00 1 1
.................................................................................TACAAAGGATCAGCCATTCTTGGGCCGTTGT................................................................................................................. 31 1 1 1.00 1 1
.............................................................................................................TGGGCAACCACTGAGATGAGGCTGT........................................................................................... 25 0 1 1.00 1 1
........................................................................................................................TGAGATGAGGCTGTGTTCCAAT................................................................................... 22 2 7 0.14 1 1

Anti-sense strand reads

TCCCAACAGACGGTGCAGAAAAGGCACCAGAGACACTGGTTACGTCGTTGTCCCCGGTGACCTACCGACCCAGTGTCCACCATGTTTCCTAGTCGGTAAGAACCCGGCAACCCGTTGGTGACTCTACTCCGACACAAGGTGTCCACACTACAAATGTGACCGGGAAGTGGTCCGTCACTGGTCGGACCGGTGTCGGTTCGTGAGATCGTGTGCGTACACCACACG

************************************************************.((((((((((((.((((.(((......(((((..(((((((((....))).....))))))...)))))))).))))...)))))).......))))))..*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:00 PM