ID:

eca-mir-9066

 Coordinate:

chr2:40245681-40245825 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.7 -38.5 -38.5

Sense Strand Reads

TAGCAACTGAGTCAGGGAAGCTGCCACTCTCCACAGAGCCACGGATGAGCAGACCAGGGACCTCAGCTCCTCCGTGGATGAGAAGGCCCATAGACAACAGTCCTGATCCTGGGCAGCCGGAATGACAGGGCTTGCCAGTGAAGGAACTGTGTCTTCCTCCTTGAAGACGGAAGTGCAATAATGACCCTGCTTCTCCCAAAGGCTTCAGTTGCCTTGTGCAAAGATCGTTTGCACTCTGAAGGGGG

***************************************************************************........(((((........((((((((..((((((..((((..........))))..)))).))))).)))))((((((......))))))(((...(((..........)))...)))....))))).*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGCCGGA............................................................................................................................ 31 0 1 18.00 18 18
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGCCGGT............................................................................................................................ 31 1 1 11.00 11 11
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGCCGG............................................................................................................................. 30 0 1 5.00 5 5
................................................................................................................................................................TTGAAGACGGAAGTGCAATAATGACCCTGCT...................................................... 31 0 1 3.00 3 3
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGC................................................................................................................................ 27 0 1 3.00 3 3
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGCCGGTTT.......................................................................................................................... 33 2 1 2.00 2 2
....................................................................................................................CCGGAATGACAGGGCTTGCCAGTGAAGGA.................................................................................................... 29 0 1 2.00 2 2
.................................................................................................................................................................TGAAGACGGAAGTGCAATAATGACC........................................................... 25 0 1 2.00 2 2
.................................................................................................................................................................TGAAGACGGAAGTGCAATAATGACCCTGCT...................................................... 30 0 1 1.00 1 1
..........................................................................................................................................TGAAGGAACTGTGTCTTCCTCCTTGAAGACT............................................................................ 31 1 1 1.00 1 1
..........................................................................................TAGACAACAGTCCTGATCCTGGGCT.................................................................................................................................. 25 1 1 1.00 1 1
................................................................................................................................................................TTGAAGACGGAAGTGCAATAATGACCC.......................................................... 27 0 1 1.00 1 1
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGCCG.............................................................................................................................. 29 0 1 1.00 1 1
..........................................................................................TAGACAACAGTCGTGATCCTGGGCAGCCGG............................................................................................................................. 30 1 1 1.00 1 1
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGCCGGTTG.......................................................................................................................... 33 3 1 1.00 1 1
...........................................................................................................................................................................................................TTCAGTTGCCTTGTGCAAAGATCGTTTGCATT.......... 32 1 1 1.00 1 1
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGCCGGAA........................................................................................................................... 32 0 1 1.00 1 1
..........................................................................................TAGACAACAGTCCTGATCCTGGGC................................................................................................................................... 24 0 1 1.00 1 1
................................................................................................................................................................TTGAAGACGGAAGTGCAATAATGACCCT......................................................... 28 0 1 1.00 1 1
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGCCGT............................................................................................................................. 30 1 1 1.00 1 1
...............................................................................................AACAGTCCTGAACCTGGGCAGCCGGAATG......................................................................................................................... 29 1 1 1.00 1 1
................................................................................................................................................................TTGAAGACGGAAGTGCAATAATGACC........................................................... 26 0 1 1.00 1 1
............................................................................................................................................................................................................TCAGTTGCCTTGTGCAAAGATCGTTTGCACT.......... 31 0 1 1.00 1 1
..........................................................................................TAGACAGCAATCCTGATCCGGGGCAGCCG.............................................................................................................................. 29 3 1 1.00 1 1
.................................................................................................................................................................TGAAGACGGAAGTGCAATAATGACCCTGCTT..................................................... 31 0 1 1.00 1 1
TAGCAACTGAGTCAGGGAAGCTGCCACTC........................................................................................................................................................................................................................ 29 0 1 1.00 1 1
..........................................................................................TAGACAACAGTCCTGATCCTGGGCAGCCGGTA........................................................................................................................... 32 1 1 1.00 1 1

Anti-sense strand reads

ATCGTTGACTCAGTCCCTTCGACGGTGAGAGGTGTCTCGGTGCCTACTCGTCTGGTCCCTGGAGTCGAGGAGGCACCTACTCTTCCGGGTATCTGTTGTCAGGACTAGGACCCGTCGGCCTTACTGTCCCGAACGGTCACTTCCTTGACACAGAAGGAGGAACTTCTGCCTTCACGTTATTACTGGGACGAAGAGGGTTTCCGAAGTCAACGGAACACGTTTCTAGCAAACGTGAGACTTCCCCC

***************************************........(((((........((((((((..((((((..((((..........))))..)))).))))).)))))((((((......))))))(((...(((..........)))...)))....))))).*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:48 AM