ID:

eca-mir-9065

 Coordinate:

chr2:28386795-28386939 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-53.7 -53.7 -53.4

Sense Strand Reads

TGGCTTGAGGAGAGTATGTAATCATGGGTACTGCCTCTGTGCCCTGGCTGAATGCTCCCCCTCTACCATATTTCCTTGAACTCGGGGTCGTGGGACTGAGCCTGTAGGGGCCAGCACACCCTCCTGCTGGGGCTTCTCCAGAGTGTGTCATCCTCCCTGTCCCCAGATCAGGTATCTCTGGCACAGGGCTAGCACCAGGCTCCAGTGCTGAGCATGGCAGGCTGTGTATGTCCCCACCTTGCTTC

************************************************....((((..((((...(((......(((((.((.((((.((.((((.((((((((.(((((((((((........))))..))))))).))).))...)))...)))))).)))))).)))))......)))...))))..))))..............************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..............TATGTAATCATGGGTACTGCCTCTGTGCCT......................................................................................................................................................................................................... 30 1 1 45.00 45 45
...............................................................TACCATATTTCCTTGAACTCGGGGTCGTG......................................................................................................................................................... 29 0 1 15.00 15 15
..............TATGTAATCATGGGTACTGCCTCTGTGCCC......................................................................................................................................................................................................... 30 0 1 13.00 13 13
...............................................................TACCATATTTCCTTGAACTCGGGGTCGTGT........................................................................................................................................................ 30 1 1 13.00 13 13
................TGTAATCATGGGTACTGCCTCTGTGCCCT........................................................................................................................................................................................................ 29 0 1 11.00 11 11
..............TATGTAATCATGGGTACTGCCTCTGTGCCA......................................................................................................................................................................................................... 30 1 1 8.00 8 8
...............................................................................................................................................................TCCCCAGATCAGGTGTCTCTGGCACAGGGC........................................................ 30 1 1 8.00 8 8
............................................................................TGAACTCGGGGTCGTGGGACTGAGCC............................................................................................................................................... 26 0 1 8.00 8 8
..............TATGTAATCATGGGTACTGCCTCTGTGCCTT........................................................................................................................................................................................................ 31 1 1 6.00 6 6
........................................................................TCCTTGAACTCGGGGTCGTGGGACTGAGC................................................................................................................................................ 29 0 1 6.00 6 6
....................................................................TATTTCCTTGAACTCGGGGTCGTGGT....................................................................................................................................................... 26 1 1 5.00 5 5
....................................................................TATTTCCTTGAACTCGGGGTCGTGGGACT.................................................................................................................................................... 29 0 1 5.00 5 5
..............TATGTAATCATGGGTACTGCCTCTGTGCCCT........................................................................................................................................................................................................ 31 0 1 4.00 4 4
.......................................................................TTCCTTGAACTCGGGGTCGTGGGACTGA.................................................................................................................................................. 28 0 1 4.00 4 4
....................................................................TATTTCCTTGAACTCGGGGTCGTGGGACTG................................................................................................................................................... 30 0 1 4.00 4 4
.......................................................................................................................................................................TCAGGTATCTCTGGCACAGGGCTAGC.................................................... 26 0 1 3.00 3 3
....................................................................TATTTCCTTGAACTCGGGGTCGTGGG....................................................................................................................................................... 26 0 1 3.00 3 3
.............................................................TCTACCATATTTCCTTGAACTCGGGGT............................................................................................................................................................. 27 0 1 3.00 3 3
......................................................................................................................................................................ATCAGGTATCTCTGGCACAGGGCTAGCACC................................................. 30 0 1 3.00 3 3
.......................................................................................................................................................................TCAGGTATCTCTGGCACAGGGCTAGCACC................................................. 29 0 1 3.00 3 3
....................................................................TATTTCCTTGAACTCGGGGTCGTGGGACTA................................................................................................................................................... 30 1 1 3.00 3 3
.............................................................TCTACCATATTTCCTTGAACTCGGGGTCGT.......................................................................................................................................................... 30 0 1 3.00 3 3
....................................................................TATTTCCTTGAACTCGGGGTCGTGT........................................................................................................................................................ 25 1 1 3.00 3 3
...............................................................TACCATATTTCCTTGAACTCGGGGTCGTGG........................................................................................................................................................ 30 0 1 2.00 2 2
..............TATGTAATCATGGGTACTGCCTCTGTGC........................................................................................................................................................................................................... 28 0 1 2.00 2 2
........................................................................TCCTTGAACTCGGGGTCGTGGGACTGAGCC............................................................................................................................................... 30 0 1 2.00 2 2
.............................................................................................................................................................................................................TGCTGAGCATGGCAGGCTGTGTATGTCCCT.......... 30 1 1 2.00 2 2
....................................................................TATTTCCTTGAACTCGGGGTCGTGGGTA..................................................................................................................................................... 28 2 1 2.00 2 2
............................................................................TGAACTCGGGGTCGTGGGACTGAG................................................................................................................................................. 24 0 1 2.00 2 2
...............................................................TACCATATTTCCTTGAACTCGGGGTC............................................................................................................................................................ 26 0 1 2.00 2 2
.............................................................TCTACCATATTTCCTTGAACTCGGGGTCGTG......................................................................................................................................................... 31 0 1 2.00 2 2
..............................................................CTACCATATTTCCTTGAACTCGGGGTCGT.......................................................................................................................................................... 29 0 1 2.00 2 2
................................................................................................................................................................CCCCAGATCAGGTGTCTCTGGCACAGG.......................................................... 27 1 1 2.00 2 2
........................................................................................................................................................................CAGGTATCTCTGGCACAGGGCTAGCACC................................................. 28 0 1 2.00 2 2
............................................................................TGAACTCGGGGTCGTGGGACTGAGCA............................................................................................................................................... 26 1 1 2.00 2 2
......................................................................................................................................................................ATCAGGTATCTCTGGCACAGGGCTAGC.................................................... 27 0 1 2.00 2 2
..............TATGTAATCATGGGAAGTGCCTCTGTGCCT......................................................................................................................................................................................................... 30 3 1 1.00 1 1
..................TAATCATGGGTACTGCCTCTGTGCCA......................................................................................................................................................................................................... 26 1 1 1.00 1 1
............................................TGGCTGAATGCTCCCCCTCTAGCATATTTCTA......................................................................................................................................................................... 32 3 1 1.00 1 1
.......................................................................TTCCTTGAACTCGGGGTCGTGGGACTGAGCCTGT............................................................................................................................................ 34 0 1 1.00 1 1
........................................................................TCCTTGAACTCGGGGTCGTGGGACTGAGCTT.............................................................................................................................................. 31 1 1 1.00 1 1
...............................................................................................................................................................TCCCCAGATCAGGTGTCTCTGGCACAGGGCT....................................................... 31 1 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTCGGGGTCGTGTT....................................................................................................................................................... 31 2 1 1.00 1 1
...............................TGCCTCTGTGCCCTGGCTGAATGCTCCC.......................................................................................................................................................................................... 28 0 1 1.00 1 1
...............................................................................................................................................................TCCCCAGATCAGGTATCTCTGGCACAGGTT........................................................ 30 2 1 1.00 1 1
.....................................................................................................................................TTCTCCAGAGTGTGTCATCCTCCCTGTCC................................................................................... 29 0 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTCGGGGTCG........................................................................................................................................................... 27 0 1 1.00 1 1
...............................TGCCTCTGTGCCCTGGCTGAATGCTCCCCCT....................................................................................................................................................................................... 31 0 1 1.00 1 1
...............................................................................................................................................................TCCCCAGATCAGGTGTCTCTGGCACAGG.......................................................... 28 1 1 1.00 1 1
.............................................................TCTACCATATTTCCTTGAACTTGGGGTCGT.......................................................................................................................................................... 30 1 1 1.00 1 1
..........................................................................CTTGAACTCGGGGTCGTGGGACTGAGCCTA............................................................................................................................................. 30 1 1 1.00 1 1
....................................................................TATTTCCTTGAACTCGGGGTCGTGGGACA.................................................................................................................................................... 29 1 1 1.00 1 1
...............................................................................................................................................................TCCCCAGATCAGGTGTCTCTGGCACAGGGCTT...................................................... 32 2 1 1.00 1 1
..............TATGTAATCATGGGTACTGCCTCTGTGCCAA........................................................................................................................................................................................................ 31 2 1 1.00 1 1
....................................................................TATTTCCTTGAACTCGGGGTCGTGGGACTGAGCCTGT............................................................................................................................................ 37 0 1 1.00 1 1
............................................................................TGAACTCGGGGTCGTGGGACTGAGC................................................................................................................................................ 25 0 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTCGGGGTCGT.......................................................................................................................................................... 28 0 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTCGGGGTCGTGC........................................................................................................................................................ 30 1 1 1.00 1 1
..............TATGTAATCATGGGTACTGGCTCTGTGCCT......................................................................................................................................................................................................... 30 2 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTAGGGGTCGTGG........................................................................................................................................................ 30 1 1 1.00 1 1
..................TAATCATGGGTACTGCCTCTGTGCCTT........................................................................................................................................................................................................ 27 1 1 1.00 1 1
............................................................................TGAACTCGGGGTCGTGGGACTGAGCCT.............................................................................................................................................. 27 0 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTCGGGGTCGTGA........................................................................................................................................................ 30 1 1 1.00 1 1
......................................................................................................................................................................................................................TGGCAGGCTGTGTATGTCCCCACC....... 24 0 1 1.00 1 1
...............................................................TACCATATTTCCGTGAACTCGCGGTCGTGT........................................................................................................................................................ 30 3 1 1.00 1 1
..............TATGTAATCATGGGTACTGACTCTGTGCCT......................................................................................................................................................................................................... 30 2 1 1.00 1 1
............................................................................TGAACTCGGGGTCGTGGGACTGAGCCTT............................................................................................................................................. 28 1 1 1.00 1 1
.........................................................................................................................................................TCCCTGTCCCCAGATCAGGTGTCTCTGGCA.............................................................. 30 1 1 1.00 1 1
..............TATGTAATCATGGGTACTGCCTCTGTGCC.......................................................................................................................................................................................................... 29 0 1 1.00 1 1
...............................................................................................................................................................TCCCCAGATAAGGTGTCTCGGGCACAGGG......................................................... 29 3 1 1.00 1 1
............................................................................TCAACTCGGGGTCGTGGGACTGAGCT............................................................................................................................................... 26 2 1 1.00 1 1
..........................................................................................TGGGACTGAGCCTGTAGGGGCCAGCACACC............................................................................................................................. 30 0 1 1.00 1 1
................TGTAATCATGGGTACTGCCTCTGTA............................................................................................................................................................................................................ 25 1 1 1.00 1 1
.......................................................................................................................................................................TCAGGTATCTCTGGCACAGTGCTAGCACC................................................. 29 1 1 1.00 1 1
.....................................................................................................................................TTCTCCAGAGTGTGTCATCCTCCCTG...................................................................................... 26 0 1 1.00 1 1
.............................................................................................................................................................TGTCCCCAGATCAGGTGTCTCTGGCACAGG.......................................................... 30 1 1 1.00 1 1
...................................................................................................................................................................CAGATCAGGTATCTCTGGCACAGGGCTAGC.................................................... 30 0 1 1.00 1 1
...........................................................................TTGAACTCGGGGTCGTGGGACTGAGCCTG............................................................................................................................................. 29 0 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTCGGGGTCA........................................................................................................................................................... 27 1 1 1.00 1 1
................TGTAATCATGGGTACTGCCTCTGTGCCC......................................................................................................................................................................................................... 28 0 1 1.00 1 1
................................................................................................................................................................CCCCAGATCAGGTGTCTCTGGCACA............................................................ 25 1 1 1.00 1 1
....................................................................TATTTCCTTGAACTCGGGGTCGTGGGACTGAGCCTG............................................................................................................................................. 36 0 1 1.00 1 1
....TTGAGGAGAGTATGTAATCATGGGTACT..................................................................................................................................................................................................................... 28 0 1 1.00 1 1
..............................CTGCCTCTGTGCCCTGGCTGAATGCTCT........................................................................................................................................................................................... 28 1 1 1.00 1 1
............................................................................TGAACTCGGGGTCGTGGGACTGAGCCTGTA........................................................................................................................................... 30 0 1 1.00 1 1
............................................................................TGAACTCGGGGTCGTGGGACTGAGCT............................................................................................................................................... 26 1 1 1.00 1 1
....................................................................TATTTCCTTGAACTCGGGGTCGTGGTA...................................................................................................................................................... 27 1 1 1.00 1 1
...............................TGCCTCTGTGCCCTGGCTGAATGCTC............................................................................................................................................................................................ 26 0 1 1.00 1 1
............................................................................TGAACTCGGGGTCGCGGGACTGAGCC............................................................................................................................................... 26 1 1 1.00 1 1
...............................................................................................................................................................TCCCCAGATCAGGTGTCTCTGGCACAGGG......................................................... 29 1 1 1.00 1 1
.....TGAGGAGAGTATGTAATCATGGGTACT..................................................................................................................................................................................................................... 27 0 1 1.00 1 1
....................................................................TATTTCCTTGAACTCGGGGTCGTGG........................................................................................................................................................ 25 0 1 1.00 1 1
......................................................................................................................................TCTCCAGAGTGTGTCATCCTCCCTGTCTTT................................................................................. 30 3 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTAGGGGTCGTGT........................................................................................................................................................ 30 2 1 1.00 1 1
........................................................................TCCTTGAACTCGGGGTCGTGGGACTGAGCCTT............................................................................................................................................. 32 1 1 1.00 1 1
................TGTAATCATGGGTACTGCCTCTGTGCCCTG....................................................................................................................................................................................................... 30 0 1 1.00 1 1
.............................................................................................................................................................TGTCCCCAGATCAGGTATCTCTGGCACAGG.......................................................... 30 0 1 1.00 1 1
.............................................................................................................................................................................................................TGCTGAGCATGGCAGGCTGTGTATGTCCCC.......... 30 0 1 1.00 1 1
.....TGAGGAGAGTATGTAATCATGGGTACTGCC.................................................................................................................................................................................................................. 30 0 1 1.00 1 1
............................................................................TGAACTCGGGGTCGTGGGACTGAGCCTGTT........................................................................................................................................... 30 1 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTCGGGGTCGGG......................................................................................................................................................... 29 1 1 1.00 1 1
........................................................................TCCTTGAACTCGGGGTCGTGGGACTGAGCCT.............................................................................................................................................. 31 0 1 1.00 1 1
...............................................................TACCATCTTGCCTTGAACTCGGGGTCGTGG........................................................................................................................................................ 30 2 1 1.00 1 1
....................................................................TATTTCCTTGAACTCGGGGTCGTGGTG...................................................................................................................................................... 27 2 1 1.00 1 1
..............TATGTAATCATGGGTACTGCCTCTGTGCCTA........................................................................................................................................................................................................ 31 2 1 1.00 1 1
.......................................................................................................................................................................TCAGGTGTCTCTGGCACAGGGCTAGCACT................................................. 29 2 1 1.00 1 1
...............................GGCCTCTGTGCCCTGGCTGAATGCTCCCC......................................................................................................................................................................................... 29 1 1 1.00 1 1
....................................................TGCTCCCCCTCTACCATATTTCCTTGA...................................................................................................................................................................... 27 0 1 1.00 1 1
...............................................................TACCATATTTCCTTGAACTCGGGGTCGTGAT....................................................................................................................................................... 31 2 1 1.00 1 1
....................................................................TATTTCCTTGGACTCGGGGTCGTGTA....................................................................................................................................................... 26 3 1 1.00 1 1
................TGTAATCATGGGTACTGCCTCTGTGCCCTGGCT.................................................................................................................................................................................................... 33 0 1 1.00 1 1
.......................................................................................................................................................................TCAGGTATCTGTGGCACAGGGCTAGC.................................................... 26 1 1 1.00 1 1
.............................................................TCTACCATATTTCCTTGAACTCGGGGTCG........................................................................................................................................................... 29 0 1 1.00 1 1
...............................................................................................................................................................TCCCCAGATCAGGTATCTCTGGCACAG........................................................... 27 0 1 1.00 1 1
...............ATGTAATCATGGGTACTGCCTCTGTGCCT......................................................................................................................................................................................................... 29 1 1 1.00 1 1
................TGTAATCATGGGTACTGCCTCTGTGCC.......................................................................................................................................................................................................... 27 0 1 1.00 1 1
......................................................................................................................................TCTCCAGAGTGTGTCATCCTCCCTGTC.................................................................................... 27 0 1 1.00 1 1
................TGTAATCATGGGTAGTGCCTCTGTGCCCT........................................................................................................................................................................................................ 29 1 1 1.00 1 1
.......................................................................................................................................................................TCAGGTATCTCTGGCACAGGGCTAGCA................................................... 27 0 1 1.00 1 1
......................................................................................................................................................................................................................TGGCAGGCTGTGTATGTCCCCACCTTGAATT 31 3 1 1.00 1 1
........................................................................................................................................TCCAGAGTGTGTCATCCTCACTGTCCT.................................................................................. 27 2 2 0.50 1 1

Anti-sense strand reads

ACCGAACTCCTCTCATACATTAGTACCCATGACGGAGACACGGGACCGACTTACGAGGGGGAGATGGTATAAAGGAACTTGAGCCCCAGCACCCTGACTCGGACATCCCCGGTCGTGTGGGAGGACGACCCCGAAGAGGTCTCACACAGTAGGAGGGACAGGGGTCTAGTCCATAGAGACCGTGTCCCGATCGTGGTCCGAGGTCACGACTCGTACCGTCCGACACATACAGGGGTGGAACGAAG

*************************************....((((..((((...(((......(((((.((.((((.((.((((.((((((((.(((((((((((........))))..))))))).))).))...)))...)))))).)))))).)))))......)))...))))..))))..............************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:48 AM