ID:

eca-mir-9063

 Coordinate:

chr2:44648638-44648758 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.7 -31.7 -31.7

Sense Strand Reads

ACTGCTTCATTGCGGAGAAGAGAAAGAGAAATGTCCTTGACCTTCCATACAGCTTGGGAATAGGGGACAGACACATGTCCTTCTTTAGAGCTGGCGCCTTGACCTTACATCAGTGGTGTCCGAGAGCTGCTATCTGAGAGACGGAACAAGGCCCTGAGTCTCCCCCTTCTGCGTGCCAGTGGGCAGGGCGTTGGGGCTGCTGTGGCTGGGATGGTCCTGCC

**************************************************************((((..((((.(((((((.(((((..((.((((((((((((.((((....)))).))).))).)).)))).)).))))).))).))......)).)))).))))........*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..................................................................................................................................TATCTGAGAGACGGAACAAGGCCCTGAGT.............................................................. 29 0 1 5.00 5 5
..................................................................................................................................TATCTGAGAGACGGAACAAGGCCCTGAGTC............................................................. 30 0 1 3.00 3 3
..................................................................................................................................TATCTGAGAGACGGAACAAGGCCCTGAGA.............................................................. 29 1 1 3.00 3 3
...............................................................................................................................TGCTATCTGAGAGACGGAACAAGGCCC................................................................... 27 0 1 2.00 2 2
...............................................................................................................................TGCTATCTGAGAGACGGAACAAGGCCCTGAG............................................................... 31 0 1 2.00 2 2
......................................................................................................................TCCGAGAGCTGCTATCTGAGAGAA............................................................................... 24 1 1 2.00 2 2
..................................................................................................................................TATCTGAGAGACGGAACAAGGCCCTGAGTTTT........................................................... 32 2 1 2.00 2 2
.............................................................................TCCTTCTTTAGAGCTGGCGCCTTGACCTT................................................................................................................... 29 0 1 1.00 1 1
................................................................................TTCTTTAGAGCTGGCGCCTGGACCTTACA................................................................................................................ 29 1 1 1.00 1 1
...............................................................................................................................TGCTATCTGAGAGACGGAACAAGGCCT................................................................... 27 1 1 1.00 1 1
.................................................................................TCTTTAGAGCTGGCGCCTTGACCTTACATC.............................................................................................................. 30 0 1 1.00 1 1
................................................................................TTCTTTAGAGCTGGCGCCTTGACCTTACT................................................................................................................ 29 1 1 1.00 1 1
......................................................................CCACATGTCCTTCTTTAGAGCTGGCGCC........................................................................................................................... 28 1 1 1.00 1 1
.........................................................................CATGTCCTTCTTTAGAGCTGGCGCCTT......................................................................................................................... 27 0 1 1.00 1 1
...............................................................................................................................TGCTATCTGAGAGACGGAACAAGGCC.................................................................... 26 0 1 1.00 1 1
..................................................................................................................................TATCTGAGAGACGGAACAAGGCCCTGAG............................................................... 28 0 1 1.00 1 1
.........................................................................CATGTCCTTCTTTAGAGCTGGCGCCTTGAC...................................................................................................................... 30 0 1 1.00 1 1
..................................................................................................................................TATCTGAGAGACGGAACAAAGCCCTGAGA.............................................................. 29 2 1 1.00 1 1
....................................................................................................................................TCTGAGAGACGGAACAAGGCCCTGAGAA............................................................. 28 2 1 1.00 1 1
..................................................................................................................................TATCTGAGAGACGGAACAAGGCCCTGAGTA............................................................. 30 1 1 1.00 1 1
.............................................................................TCCTTCTTTAGAGCTGGCGCCTTGACC..................................................................................................................... 27 0 1 1.00 1 1
...................................................................................TTTAGAGCTGGCGCCTTGACCTTACAAA.............................................................................................................. 28 2 1 1.00 1 1
.............................................................................TCCTTCTTTAGAGCTGGCGCCTTGAC...................................................................................................................... 26 0 1 1.00 1 1
..................................................................................................................................TATCTGAGAGAAGGAACAAGGCCCTGAGTCT............................................................ 31 1 1 1.00 1 1

Anti-sense strand reads

TGACGAAGTAACGCCTCTTCTCTTTCTCTTTACAGGAACTGGAAGGTATGTCGAACCCTTATCCCCTGTCTGTGTACAGGAAGAAATCTCGACCGCGGAACTGGAATGTAGTCACCACAGGCTCTCGACGATAGACTCTCTGCCTTGTTCCGGGACTCAGAGGGGGAAGACGCACGGTCACCCGTCCCGCAACCCCGACGACACCGACCCTACCAGGACGG

***********************************************((((..((((.(((((((.(((((..((.((((((((((((.((((....)))).))).))).)).)))).)).))))).))).))......)).)))).))))........************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:48 AM