ID:

eca-mir-9060

 Coordinate:

chr2:33631981-33632119 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.1 -48.0 -47.6 -47.5

Sense Strand Reads

CCCTTTGTAGGGAAAAGTGGATGGCTGAATGACAGCTGAATAATTTTGAGGGGGCTAAAATCATCGTCAGCTGGCTCCTTCTGTGGCATTGGCTTCAGCCTGCTGACATGGTGCTGTCGTATAGCTGTGAGCACGCTGATGTCTGCTGCAGtGGggTGgggtGtggTggTGtgTGtttTgGTgggTGTggTTgTggtGgggTTTtgggTGgTTTtGGTGTTTgtgtGgGTTTtTgtggG

****************************************.............((...............((.(((((..((((((((..(((.(((((.((((.(((....(((((...)))))))).)))).))))).))))))))))).))))).))))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...............................................................................................................................TGAGCACGCTGATGTCTGCTGT.......................................................................................... 22 1 1 24.00 24 24
...............................................................................................................................TGAGCACGCTGATGTCTGCTGTT......................................................................................... 23 2 1 15.00 15 15
...............................................................................................................................TGAGCACGCTGATGTCTGCTGTA......................................................................................... 23 1 1 8.00 8 8
...............................................................................................................................TGAGCACGCTGATGTCTGCTGTAA........................................................................................ 24 2 1 3.00 3 3
...............................................................................................................................TGAGCACGCTGATGTCTGCTGAAT........................................................................................ 24 2 1 3.00 3 3
...............................................................................................................................TGAGCACGCTGATGTCTGCT............................................................................................ 20 0 1 3.00 3 3
...............................................................................................................................TGAGCACGCTGATGTCTGCTGA.......................................................................................... 22 1 1 3.00 3 3
...............................................................................................................................TGAGCACGCTGATGTCTGCTG........................................................................................... 21 0 1 2.00 2 2
...............................................................................................................................TGAGCACGCTGATGTCTGCTGAT......................................................................................... 23 2 1 2.00 2 2
...............................................................................................................................TGAGCACGCTGATGTCTGCTGTAT........................................................................................ 24 2 1 2.00 2 2
.......................................................TAAAATCATCGTCAGCTGGCTCC................................................................................................................................................................. 23 0 1 2.00 2 2
...............................................................................................................................TGAGCACGCTGATGTCTGCTGC.......................................................................................... 22 0 1 1.00 1 1
.........................................................................................................................TAGCTGTGAGCACGCTGATGTCTGCTGCA......................................................................................... 29 0 1 1.00 1 1
..................................................................................................................................................................GACCTCCTGACTGAAATCGTCCCTGTC.................................................. 27 0 1 1.00 1 1
...............................................................................................................................TGAGCACGCTGATGTCTGCTGAGA........................................................................................ 24 3 1 1.00 1 1
...............................................................................................................................TGAGCACGCTGATGTCTGCTA........................................................................................... 21 1 1 1.00 1 1
.........................................................................................................................................................................TGACTGAAATCGTCCCTGTCCGTCTCCAGCCT...................................... 32 2 1 1.00 1 1
...............................................................................................................................TGAGCACGCTGATGTCTGCTGAA......................................................................................... 23 1 1 1.00 1 1
...............................................................................................................................TGAGCACGCTGATGTCTGCTGAGT........................................................................................ 24 3 1 1.00 1 1
...............................................................................................................................TGAGCACGCTGATGTCTGCTGTAAAT...................................................................................... 26 3 1 1.00 1 1
.........................................................................................................................TAGCTGTGAGCACGCTGATGTCTGCTGCTT........................................................................................ 30 2 1 1.00 1 1
...............................................................................................................................TGAGCACGCTGATGTCGGCTGTA......................................................................................... 23 2 1 1.00 1 1
.......................................................TAAAATCATCGTCAGCTGGCTCCTTCTGTGT......................................................................................................................................................... 31 1 1 1.00 1 1
............................................................................................................TGGTGCTGTCGTATAGCTGTGAGCATT........................................................................................................ 27 2 1 1.00 1 1
...............................................................................................................................TGAGCACGCTGATGTCTGCTGTTGA....................................................................................... 25 2 1 1.00 1 1
..............................................................................................................................................................CCCAGACCTCCTGACTGAAATCGTCCCTGTA.................................................. 31 1 1 1.00 1 1
...............................................................................................................................TGAGCACGCTGATGTCTGCTGTG......................................................................................... 23 2 2 0.50 1 1
...............................................................................................................................TGAGCACGCGGATGTCTGCGGT.......................................................................................... 22 3 4 0.25 1 1

Anti-sense strand reads

GGGAAACATCCCTTTTCACCTACCGACTTACTGTCGACTTATTAAAACTCCCCCGATTTTAGTAGCAGTCGACCGAGGAAGACACCGTAACCGAAGTCGGACGACTGTACCACGACAGCATATCGACACTCGTGCGACTACAGACGACGTCtCCggACgggtCtggAggACtgACtttAgCAgggACAggAAgAggtCgggAAAtgggACgAAAtCCACAAAgtgtCgCAAAtAgtggC

*****************************************************************************.............((...............((.(((((..((((((((..(((.(((((.((((.(((....(((((...)))))))).)))).))))).))))))))))).))))).))))**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:48 AM