ID:

eca-mir-9058b

 Coordinate:

chrX:42363578-42363710 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.1 -34.1 -33.9
mature

  1. chr1:86853263-86853289 -
  2. chr3:47064111-47064137 -
  3. chr3:84540616-84540642 -
  4. chr6:55758844-55758870 -
  5. chr7:52617205-52617231 -
  6. chr7:92327307-92327333 -
  7. chr8:84520274-84520300 -
  8. chr17:30884971-30884997 -
  9. chr18:7422971-7422997 -
  10. chr22:14111948-14111974 -
  11. chr22:34023919-34023945 -
  12. chr23:55674806-55674832 -
  13. chr24:34437482-34437508 -
  14. chr29:1899337-1899363 -
  15. chr30:687952-687978 -
  16. eca-mir-9058b  chrX:42363645-42363671 -
  17. chrX:63627709-63627735 -
  18. chrX:80799955-80799981 -
  19. chrUn:17364241-17364267 -
  20. chrUn:36454234-36454260 -
star

  1. chr7:51832162-51832185 +
  2. chr10:31226991-31227014 -
  3. chr12:18943417-18943440 -
  4. chr18:13361524-13361547 +
  5. chr18:37583239-37583262 -
  6. chr18:58234396-58234419 -
  7. chrX:15774536-15774559 -
  8. eca-mir-9058b  chrX:42363613-42363636 -
  9. chrUn:27346941-27346964 +
  10. chrUn:40081833-40081856 +
  11. chrUn:111536267-111536290 -

Sense Strand Reads

CATCTTCTACAGTCTGTGGTTAGCTCCCCTAGCTATGCTACTTTTGTCCCGGGGTCTTCCAGCCTTGTGGCTGCTGGATGGGTGCTCTCTACTAGTGCTGTGCAGAGGCTTTCACTGAGGCTGCTGTGAGCCTGTAGGGTTTCCCCCAGGCTACGGAGCCAGGTCGCTGGAACGCCACCCAGCCCCAGTCCTGTTCCCCAGGAACTCGGGGAGCCCTTTGCCCTGACTGGGGA

**************************************************************************(((..(((....((((((.((.(((..((((.((((((....)))))).)))).)))))))))))...))))))((((....))))...********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................................TACTAGTGCTGTGCAGAGGCTTTCACT..................................................................................................................... 27 0 20 0.25 5 5
............................................................................................................................TGTGAGCCTGTAGGGTTTCCCCCA..................................................................................... 24 0 11 0.18 2 2
....TTCTACAGTCTGTGGTTAGCTCCCCTAGC........................................................................................................................................................................................................ 29 0 14 0.14 2 2

Anti-sense strand reads

GTAGAAGATGTCAGACACCAATCGAGGGGATCGATACGATGAAAACAGGGCCCCAGAAGGTCGGAACACCGACGACCTACCCACGAGAGATGATCACGACACGTCTCCGAAAGTGACTCCGACGACACTCGGACATCCCAAAGGGGGTCCGATGCCTCGGTCCAGCGACCTTGCGGTGGGTCGGGGTCAGGACAAGGGGTCCTTGAGCCCCTCGGGAAACGGGACTGACCCCT

**********************************************************************(((..(((....((((((.((.(((..((((.((((((....)))))).)))).)))))))))))...))))))((((....))))...************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.........................................................................GACCTACCCACGAGAGATGATCACGA...................................................................................................................................... 26 0 20 0.55 11 11
........................................................................CGACCTACCCACGAGAGATGATCACGA...................................................................................................................................... 27 0 20 0.45 9 9
.....................................................................CGACGACCTACCCACGAGAGATGATCACGA...................................................................................................................................... 30 0 20 0.20 4 4
....................................................................CCGACGACCTACCCACGAGAGATGATCACGA...................................................................................................................................... 31 0 20 0.15 3 3
......................................................................GACGACCTACCCACGAGAGATGATCACGA...................................................................................................................................... 29 0 20 0.10 2 2
.......................................................................ACGACCTACCCACGAGAGATGATCACGA...................................................................................................................................... 28 0 20 0.10 2 2
..............................................................................................CACGACACGTCTCCGAAAGTGACTCCGAC.............................................................................................................. 29 0 20 0.05 1 1
....AAGATGTCAGACACCAATCGGTG.............................................................................................................................................................................................................. 23 2 20 0.05 1 1
.....................................................................CGACGAGCTACCCACGAGAGATGATCACGA...................................................................................................................................... 30 1 20 0.05 1 1
...........................................................GTCGGAACACCGACGACCTACCCACGAGAGATGATCACGA...................................................................................................................................... 40 0 20 0.05 1 1
...................................................................................................CACGTCTCCGAAAGTGACT................................................................................................................... 19 0 20 0.05 1 1
........................................................................CGACCTACCCACGAGAGATGATCACGAC..................................................................................................................................... 28 0 20 0.05 1 1
GTAGGAGATGTCAGACACCAAT................................................................................................................................................................................................................... 22 1 20 0.05 1 1
....................................................................CCGACGACCTACCCACGAGAGATGATCAC........................................................................................................................................ 29 0 20 0.05 1 1
..AGAAGATGTCAGACACCAAT................................................................................................................................................................................................................... 20 0 20 0.05 1 1
....................................................................................................................................................................................TCGGGGTCAGGACAAGGGGTCCTTGAGC......................... 28 0 20 0.05 1 1
..............................................................................ACCCACGAGAGAAGATCACGACAC................................................................................................................................... 24 1 20 0.05 1 1
.......................................................................ACGACCTACCCACGAGAGATGATCACGC...................................................................................................................................... 28 1 20 0.05 1 1

Generated: 09/01/2015 at 12:13 PM