ID:

eca-mir-9058a

 Coordinate:

chr1:49250181-49250301 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CTACAGTCTGTGGTTAGCTCACCTAGCTATGCTACTTTTGTCCCGGGGTCTTCCAGCCTTGTGGCTGCCAGATGGGTGCTCTCTACTAGTGCTGTGCAGAGGCTTTCCCTGAGGCTGCTGTGAGCCTGTAGGGTTTGCCCCTAGGCTACGAAGCTGGGTCGCTGGAACTCCACCCAGCCCCAGTCCTGTTCCCCAGGAACTCGGGGAGCCCTTTGCCCTGT

***********************************.(((((((.(((((((..(((((....)))))..)))).((((..((((((.((.(((..((((.((((((....)))))).)))).)))))))))))..))))))).))..)))))((((((..(((((........)))))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
......................................................................................................................TGTGAGCCTGTAGGGTTTGCCCCCA.............................................................................. 25 1 5 0.20 1 1
.............................TGCTACTTTTGTCCCGGGGTCGTCCAGCC................................................................................................................................................................... 29 1 20 0.05 1 1

Anti-sense strand reads

GATGTCAGACACCAATCGAGTGGATCGATACGATGAAAACAGGGCCCCAGAAGGTCGGAACACCGACGGTCTACCCACGAGAGATGATCACGACACGTCTCCGAAAGGGACTCCGACGACACTCGGACATCCCAAACGGGGATCCGATGCTTCGACCCAGCGACCTTGAGGTGGGTCGGGGTCAGGACAAGGGGTCCTTGAGCCCCTCGGGAAACGGGACA

***********************************.(((((((.(((((((..(((((....)))))..)))).((((..((((((.((.(((..((((.((((((....)))))).)))).)))))))))))..))))))).))..)))))((((((..(((((........)))))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
...................................................................GGTCTACCCACGAGAGATGATCACGA................................................................................................................................ 26 0 20 1.25 25 25
................................................................GACGGTCTACCCACGAGAGATGATCACGA................................................................................................................................ 29 0 20 1.00 20 20
...............................................................CGACGGTCTACCCACGAGAGATGATCACGA................................................................................................................................ 30 0 20 0.95 19 19
....................................................................GTCTACCCACGAGAGATGATCACGA................................................................................................................................ 25 0 20 0.40 8 8
..................................................................CGGTCTACCCACGAGAGATGATCACGACAC............................................................................................................................. 30 0 20 0.35 7 7
......................................................................CTACCCACGAGAGATGATCACGA................................................................................................................................ 23 0 20 0.25 5 5
...................................................................GGTCTACCCACGAGAGATGATCACGACAC............................................................................................................................. 29 0 20 0.25 5 5
..............................................................CCGACGGTCTACCCACGAGAGATGATCACGA................................................................................................................................ 31 0 20 0.25 5 5
...................................................................GGTCTACCCACGAGAGATGATCACGC................................................................................................................................ 26 1 20 0.25 5 5
..................................................................TGGTCTACCCACGAGAGATGATCACGA................................................................................................................................ 27 1 20 0.25 5 5
........................................................................ACCCACGAGAGATGATCACGACACGTCT......................................................................................................................... 28 0 20 0.25 5 5
.....................................................................TCTACCCACGAGAGATGATCACGA................................................................................................................................ 24 0 20 0.20 4 4
.........................................................................CCCACGAGAGATGATCACGA................................................................................................................................ 20 0 20 0.15 3 3
.................................................................ACGGTCTACCCACGAGAGATGATCAC.................................................................................................................................. 26 0 20 0.15 3 3
...............................................................CGACGGTCTACCCACGAGAGATGATCACGACA.............................................................................................................................. 32 0 20 0.10 2 2
..............................................................CCGACGGTCTACCCACGAGAGATGAT..................................................................................................................................... 26 0 20 0.10 2 2
...............................................................CGACGGTCTACCCACGAGAGCTGCTCACGA................................................................................................................................ 30 2 20 0.05 1 1
................................................................GACGGTCTACCCACGAGAGATGATCACGC................................................................................................................................ 29 1 20 0.05 1 1
...............................GATGAAAACAGGGCCCCAGAAGGTCGGAACACC............................................................................................................................................................. 33 0 20 0.05 1 1
..................................................................CGGTCTAGCCACGAGAGATGATCACGA................................................................................................................................ 27 1 20 0.05 1 1
.........................................................AAACACCGACGGTCTACCCACGAGAGATGAT..................................................................................................................................... 31 1 20 0.05 1 1
...........................................................TTACCGACGGTCTACCCACGAGAGATGATCACGA................................................................................................................................ 34 2 20 0.05 1 1
........................................AGGGCCCCAGAAGGTCGGAACACCG............................................................................................................................................................ 25 0 20 0.05 1 1
.................................................................ACGGTCTACCCACGAGAGATGATCACGAC............................................................................................................................... 29 0 20 0.05 1 1
.................................................................ACGGTCTACCCACGAGAGATGATCACGG................................................................................................................................ 28 1 20 0.05 1 1
....................................................................GTCTACCCACGAGAGATGATCACGACACGT........................................................................................................................... 30 0 20 0.05 1 1
.................................................................TCGGTCTAACCACGAGAGATGATCACGA................................................................................................................................ 28 2 20 0.05 1 1
..................................................................CGGTCTACCCACGAGAGATGATCACGAC............................................................................................................................... 28 0 20 0.05 1 1
..................................................................CGGTCTACCCACGACAGATGATCACGA................................................................................................................................ 27 1 20 0.05 1 1
......................................................................CTACCCACGAGAGATGATCACGACACGT........................................................................................................................... 28 0 20 0.05 1 1
................................................................GACGGTCTACCCACGAGAGATGATCACGAT............................................................................................................................... 30 1 20 0.05 1 1
...................................................................GGTCTAACCACGAGAGATGATCACGA................................................................................................................................ 26 1 20 0.05 1 1
...........................................................TTACCGACGGTCTACCCACGAGAGATGATCAC.................................................................................................................................. 32 2 20 0.05 1 1
.................................TGAAAACAGGGCCCCAGAAGGTCGGAAC................................................................................................................................................................ 28 0 20 0.05 1 1

Generated: 09/01/2015 at 11:30 AM