ID:

eca-mir-9056

 Coordinate:

chr1:91711374-91711508 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.8 -45.6 -45.4

Sense Strand Reads

CTGGGCGGTGTGCGAGGACTGACGTGAACGGCAGGGCCTCCTCTCGGCGGAGCGGCGCCGGCCTAGTCCGCGCGAGAGCGGCTGCTGGGGCCGAGGCCCGGAGGACTGGCCTTGGAGCATCTTCTGGCCCTTCGCTGGCTCCTCGAGCTCGGGCTCCTCTCTGCAGTGGGCGTTGGAAGTCTGCAGGGCACTGTTACTCCAGCCCCTTCGTTGACGGAGGCCCTAATGGCCGCCC

**************************************************************************************((((((..(((.((.(((((((((...((.((........))))...))))).)))))).)))..)))))).((((((((...((.......))))))))))........*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.....................................................................................................AGGACTGGCCTTGGAGCATCTTCTGGCC.......................................................................................................... 28 0 1 2.00 2 2
........TGTGCGAGGACTGACGTGAACGGCA.......................................................................................................................................................................................................... 25 0 1 2.00 2 2
..................................................................................................................................TTCGCTGGCTCCTCGAGCTCGGGCTCC.............................................................................. 27 0 1 2.00 2 2
............................................................................................................................................................................TTGGAAGTCTGCAGGGCACTGTTACA..................................... 26 1 1 1.00 1 1
.........................................................................................................................TTCTGGCCCTTCGCTGGCTCCTCGAGA....................................................................................... 27 1 1 1.00 1 1
.....................................................................................................................................................................................TGCAGGGCACTGTTACTCCAGCC............................... 23 0 1 1.00 1 1
.....................................................................................TGGGGCCGAGGCCCGGAGGACTGGCCTT.......................................................................................................................... 28 0 1 1.00 1 1
...............................................................................................................TTGGAGCATCTTCTGGCCCTTCGCT................................................................................................... 25 0 1 1.00 1 1
.....................................................................................................AGGACTGGCCTTGGAGCATATTCTGGCC.......................................................................................................... 28 1 1 1.00 1 1
..............................................................................................................................................TCGAGCTCGGGCTCCTCTCTGAAGTGGGCGT.............................................................. 31 1 1 1.00 1 1
............................................................................................................................................................................TTGGAAGTCTGCAGGGCACTGTTACTT.................................... 27 1 1 1.00 1 1
..................................................................................................................................TTCGCTGGCTCCTCGAGCTCGGGCTCCAG............................................................................ 29 2 1 1.00 1 1
.............................................................................................................................................................TCTCTGCAGTGGGCGTTGGAAGTC...................................................... 24 0 1 1.00 1 1

Anti-sense strand reads

GACCCGCCACACGCTCCTGACTGCACTTGCCGTCCCGGAGGAGAGCCGCCTCGCCGCGGCCGGATCAGGCGCGCTCTCGCCGACGACCCCGGCTCCGGGCCTCCTGACCGGAACCTCGTAGAAGACCGGGAAGCGACCGAGGAGCTCGAGCCCGAGGAGAGACGTCACCCGCAACCTTCAGACGTCCCGTGACAATGAGGTCGGGGAAGCAACTGCCTCCGGGATTACCGGCGGG

***************************************((((((..(((.((.(((((((((...((.((........))))...))))).)))))).)))..)))))).((((((((...((.......))))))))))........************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:31 AM