ID:

eca-mir-9052-1

 Coordinate:

chr1:36456271-36456385 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.8 -50.8 -50.3
mature

  1. eca-mir-9052-1  chr1:36456353-36456382 +
  2. eca-mir-9052-2  chr1:38525297-38525326 -
star

  1. eca-mir-9052-1  chr1:36456289-36456314 +
  2. eca-mir-9052-2  chr1:38525365-38525390 -

Sense Strand Reads

TTCCCGGCTCTCGCTTCCCCAGTCAGGATGTGCTGCGCCCCCTTCAGCCCAGCCGTGACTCTCCCCAGTGGTCTCCCGAGACGCCGTCAGCATGAGCCTCTCGGCAGCGGTGGCTGAGGGGCCGCAGCGTGTTGGACTCACTGCCGCGCTTGGAGACGAGGAGGAACGGGTCTTTCTAAGGGAACCAAAATGCCAGACAAAAAAGAAAAATACCG

*****************************************************...((((((((((....((((((.(((.((.((.(((..((((..((.(((((((.((((((....)))))).)).)))))))))))))).)))))))))))))..)).)))..))))).....************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGA..................................................... 30 0 2 4579.50 9159 9159
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGG...................................................... 30 0 2 1041.50 2083 2083
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGG...................................................... 29 0 2 713.50 1427 1427
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGT..................................................... 30 1 2 247.00 494 494
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAG....................................................... 29 0 2 227.50 455 455
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGA...................................................... 30 1 2 188.00 376 376
....................................................................TGGTCTCCCGAGACGCCGTCAGCATG......................................................................................................................... 26 0 2 142.50 285 285
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGGA..................................................... 31 0 2 132.00 264 264
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGGT..................................................... 31 1 2 102.00 204 204
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGT...................................................... 30 1 2 75.50 151 151
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGAT.................................................... 31 1 2 46.00 92 92
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGA...................................................... 29 1 2 34.00 68 68
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGTT.................................................... 31 2 2 31.50 63 63
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACG......................................................... 27 0 2 30.00 60 60
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGA........................................................ 28 0 2 28.50 57 57
....................................................................................................................................TGGACTCACTGCCGCGCTTGGGGACGAGGA..................................................... 30 1 2 25.00 50 50
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGAC.......................................................... 26 0 2 24.50 49 49
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGA...................................................................................................................................... 26 0 2 24.00 48 48
....................................................................................................................................TGGACTCACTGGCGCGCTTGGAGACGAGGA..................................................... 30 1 2 23.50 47 47
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAAGA......... 30 0 1 22.00 22 22
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAG....................................................... 28 0 2 21.50 43 43
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGATT................................................... 32 2 2 21.00 42 42
...............TCCCCAGTCAGGATGTGCTGCGCCCCCTTC.......................................................................................................................................................................... 30 0 2 21.00 42 42
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGACGCC.................................................................................................................................. 30 0 2 20.00 40 40
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGAA.................................................... 31 1 2 19.50 39 39
....................................................................................................................................TGGACTCACTGCCGCGCTTAGAGACGAGGA..................................................... 30 1 2 19.00 38 38
....................................................................................................................................TGGACTCACTGCGGCGCTTGGAGACGAGGA..................................................... 30 1 2 18.50 37 37
..............TTCCCCAGTCAGGATGTGCTGCGCCCC.............................................................................................................................................................................. 27 0 2 18.50 37 37
.TCCCGGCTCTCGCTTCCCCAGTCAGGATGTG....................................................................................................................................................................................... 31 0 2 18.00 36 36
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGGCGAGGA..................................................... 30 1 2 17.00 34 34
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGA........................................................... 25 0 2 16.50 33 33
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAGACG......................................................... 29 0 2 16.00 32 32
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGACGCCT................................................................................................................................. 31 1 2 14.50 29 29
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGG..................................................... 30 1 2 14.50 29 29
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAG............................................................ 24 0 2 14.50 29 29
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGACAAAAA............ 30 0 1 14.00 14 14
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAAGAA........ 31 0 1 14.00 14 14
....................................................................................................................................TGGACTCACTGCCGCGCTTGGCGACGAGGA..................................................... 30 1 2 13.00 26 26
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGAA..................................................... 31 1 2 13.00 26 26
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGACGC................................................................................................................................... 29 0 2 13.00 26 26
.......................CAGGATGTGCTGCGCCCCCTTCAGCCCAGC.................................................................................................................................................................. 30 0 3 13.00 39 39
.............................................................TCCCCAGTGGTCTCCCGAGACGCCGTCAGC............................................................................................................................ 30 0 2 13.00 26 26
....................................................................................................................................TGGACTAACTGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 12.00 24 24
..............TTCCCCAGTCAGGATGTGCTGCGCCC............................................................................................................................................................................... 26 0 2 12.00 24 24
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGAA..................................................................................................................................... 27 1 2 11.50 23 23
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAGAC.......................................................... 28 0 2 10.50 21 21
....................................................................................................................................TGGACTCACTGCCGGGCTTGGAGACGAGGA..................................................... 30 1 2 10.50 21 21
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAAGAATT...... 33 2 1 10.00 10 10
....................................................................................................................................TGGACTCACGGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 10.00 20 20
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGAC..................................................................................................................................... 27 0 2 9.50 19 19
....................................................................................................................................TGGACTCACTGCCGCGGTTGGAGACGAGGA..................................................... 30 1 2 9.50 19 19
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGAA..................................................... 30 1 2 9.00 18 18
..........TCGCTTCCCCAGTCAGGATGTGCTGCGCCCT.............................................................................................................................................................................. 31 1 2 9.00 18 18
.................................................................CAGTGGTCTCCCGAGACGCCGTCAGCATG......................................................................................................................... 29 0 2 8.50 17 17
....................................................................................................................................TGGACTCACTGCAGCGCTTGGAGACGAGGA..................................................... 30 1 2 8.00 16 16
....................................................................................................................................TGGACTCACTGCCGCGATTGGAGACGAGGA..................................................... 30 1 2 8.00 16 16
......................TCAGGATGTGCTGCGCCCCCTTCAGCCCAGC.................................................................................................................................................................. 31 0 3 8.00 24 24
...............TCCCCAGTCAGGATGTGCTGCGCCCC.............................................................................................................................................................................. 26 0 2 7.50 15 15
..........TCGCTTCCCCAGTCAGGATGTGCTGCGCCT............................................................................................................................................................................... 30 1 2 7.50 15 15
..............TTCCCCAGTCAGGATGTGCTGCGCCCCCT............................................................................................................................................................................ 29 0 2 7.00 14 14
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGTA..................................................... 31 1 2 7.00 14 14
..............TTCCCCAGTCAGGATGTGCTGCGCC................................................................................................................................................................................ 25 0 2 7.00 14 14
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGACAAAA............. 29 0 1 7.00 7 7
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAGACT......................................................... 29 1 2 6.50 13 13
...............TCCCCAGTCAGGATGTGCTGCGCCCCC............................................................................................................................................................................. 27 0 2 6.50 13 13
....................................................................................................................................TGGACTGACGGCCGCGCTTGGAGACGAGGA..................................................... 30 2 2 6.00 12 12
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGACAAAAAT........... 31 1 1 6.00 6 6
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGAG.................................................... 31 0 2 6.00 12 12
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGT...................................................... 29 1 2 6.00 12 12
....................................................................................................................................TGGACTCACTGACGCGCTTGGAGACGAGGA..................................................... 30 1 2 6.00 12 12
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGAC................. 25 0 1 6.00 6 6
..........................................TTCAGCCCAGCCGTGACTCTCCCCAGTGGT............................................................................................................................................... 30 0 3 5.67 17 17
...................................................................................................................................TTGGACTCACTGCCGCGCTAGGAGACGAGG...................................................... 30 1 2 5.50 11 11
...................................................................................................................................TTGGACTCACTGCCGCGCTGGGAGACGAGG...................................................... 30 1 2 5.50 11 11
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGA........................................................ 27 0 2 5.50 11 11
....................................................................................................................................TGGACTGACTGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 5.50 11 11
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAGA........................................................... 27 0 2 5.00 10 10
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGTGG...................................................... 30 1 2 5.00 10 10
...................................................................................................................................TTGGACTCACTGGCGCGCTTGGAGACGAGG...................................................... 30 1 2 5.00 10 10
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAAGAATTT..... 34 3 1 5.00 5 5
....................................................................................................................................TGGACTCACTGCCGCGCTTGGTGACGAGGA..................................................... 30 1 2 5.00 10 10
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGTA.................................................... 31 2 2 5.00 10 10
.....................................................................................................................................GGACTCACTGCCGCGCTTGGAGACGAGGA..................................................... 29 0 2 4.50 9 9
...................................................................................................................................TTGGACTCACTGCCGCGCTTGCAGACGAGG...................................................... 30 1 2 4.50 9 9
...............TCCCCAGTCAGGATGTGCTGCGCCC............................................................................................................................................................................... 25 0 2 4.50 9 9
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAGACGT........................................................ 30 1 2 4.50 9 9
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGC..................................................... 30 1 2 4.50 9 9
....................................................................TGGTCTCCCGAGACGCCGTCAGCATGAGCCT.................................................................................................................... 31 0 2 4.50 9 9
..........TCGCTTCCCCAGTCAGGATGTGCTGCGCC................................................................................................................................................................................ 29 0 2 4.00 8 8
....................................................................................................................................TGGACTCACTGCCGCGCTTCGAGACGAGGA..................................................... 30 1 2 4.00 8 8
....................................................................................................................................TGGACTCACTGCGGCGCTTGGAGACGAGG...................................................... 29 1 2 4.00 8 8
....................................................................................................................................TGGACTCACGGCCGCGCTTAGAGACGAGGA..................................................... 30 2 2 4.00 8 8
.......................CAGGATGTGCTGCGCCCCCTTCAGCCC..................................................................................................................................................................... 27 0 3 4.00 12 12
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAA.............. 25 0 1 4.00 4 4
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGG.............................................................. 24 0 2 4.00 8 8
..........................................TTCAGCCCAGCCGTGACTCTCCCCAGT.................................................................................................................................................. 27 0 3 4.00 12 12
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGGTT.................................................... 32 2 2 4.00 8 8
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGAGT................................................... 32 1 2 4.00 8 8
...................................................GCCGTGACTCTCCCCAGTGGTCTCCCGAGA...................................................................................................................................... 30 0 2 4.00 8 8
....................................................................TGGTCTCCCGAGACGCCGTCAGCATGAGCCTC................................................................................................................... 32 0 2 3.50 7 7
...................................................................................................................................TTGGACTCACTGACGCGCTTGGAGACGAGG...................................................... 30 1 2 3.50 7 7
....................................................................................................................................TGGACTCACGGCCGCGCTTGGAGACGAGG...................................................... 29 1 2 3.50 7 7
....................................................................................................................................TGGACTCACTGCCGCGCTTTGAGACGAGGA..................................................... 30 1 2 3.50 7 7
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGAT..................................................................................................................................... 27 1 2 3.50 7 7
....................................................................TGGTCTCCCGAGACGCCGTCAGCATGT........................................................................................................................ 27 1 2 3.50 7 7
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAAGATT....... 32 2 1 3.00 3 3
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAAG.......... 29 0 1 3.00 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTTGTAGACGAGG...................................................... 30 1 2 3.00 6 6
..........TCGCTTCCCCAGTCAGGATGTGCTGCGCCC............................................................................................................................................................................... 30 0 2 3.00 6 6
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGACAATT............. 29 2 1 3.00 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGAA.......................................................... 26 1 2 3.00 6 6
.......................................................................TCTCCCGAGACGCCGTCAGCATGAGCCTC................................................................................................................... 29 0 2 3.00 6 6
.TCCCGGCTCTCGCTTCCCCAGTCAGGATG......................................................................................................................................................................................... 29 0 2 3.00 6 6
TTCCCGGCTCTCGCTTCCCCAGTCAGGATG......................................................................................................................................................................................... 30 0 2 3.00 6 6
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAAGAAT....... 32 1 1 3.00 3 3
....................................................................................................................................TGGACTCACTGCCGCGCTTGGGGACGAGG...................................................... 29 1 2 3.00 6 6
......................TCAGGATGTGCTGCGCCCCCTTCAGCCC..................................................................................................................................................................... 28 0 3 3.00 9 9
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGATA................................................... 32 2 2 3.00 6 6
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAG............................................................ 26 0 2 3.00 6 6
....................................................................................................................................AGGACTCACTGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 3.00 6 6
.....................................................CGTGACTCTCCCCAGTGGTCTCCCGAGA...................................................................................................................................... 28 0 2 3.00 6 6
...................................................................................................................................CTGGACTCACTGCCGCGCTTGGAGACGAGGA..................................................... 31 1 2 3.00 6 6
....................................................................................................................................TGGACTCACTGCGGCGCTTGGAGGCGAGGA..................................................... 30 2 2 3.00 6 6
..........................................................................................................................................................................TCTTTCTAAGGGAACCAAAATGCCAGACA................ 29 0 1 3.00 3 3
..........................................TTCAGCCCAGCCGTGACTCTCCCCAGTGG................................................................................................................................................ 29 0 3 2.67 8 8
....................................................................................................................................TGGACTCACTGGCGCGCTTGGAGACGAGG...................................................... 29 1 2 2.50 5 5
....................................................................................................................................TGGACTCACCGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 2.50 5 5
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGACGCCTTTT.............................................................................................................................. 34 3 2 2.50 5 5
.................................................CAGCCGTGACTCTCCCCAGTGGTCTCCCGAGT...................................................................................................................................... 32 1 2 2.50 5 5
....................................................CCGTGACTCTCCCCAGTGGTCTCCCGAGA...................................................................................................................................... 29 0 2 2.50 5 5
..............TTCCCCAGTCAGGATGTGCTGCGCCCT.............................................................................................................................................................................. 27 1 2 2.50 5 5
....................................................................................................................................TGGACTCACAGCCGCGCTTAGAGACGAGGA..................................................... 30 2 2 2.50 5 5
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGAAA.................................................................................................................................... 28 2 2 2.50 5 5
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGTTT................................................... 32 3 2 2.50 5 5
....................................................................................................................................CGGACTCACTGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 2.50 5 5
....................................................................................................................................TGGACTCACTGCCGCGGTTGGAGACGAGG...................................................... 29 1 2 2.50 5 5
...................................................................................................................................TTGGACTCACTGCCGCGCTTGTAGACGAGT...................................................... 30 2 2 2.50 5 5
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGAATT................................................................................................................................... 29 3 2 2.50 5 5
....................................................................................................................................TGGACTCACTGCCGCGCTTGGCGACGAGGT..................................................... 30 2 2 2.50 5 5
.............................................................................................................................................TGCCGCGCTTGGAGACGAGGAGGAACGGG............................................. 29 0 2 2.50 5 5
..............TTCCCCAGTCAGGATGTGCTGCGCCCCC............................................................................................................................................................................. 28 0 2 2.50 5 5
....................................................................................................................................TGGACTCACTGCAGCGCTTGGAGACGAGG...................................................... 29 1 2 2.50 5 5
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACT......................................................... 27 1 2 2.50 5 5
..............................TGCTGCGCCCCCTTCAGCCCAGCCGTGACT........................................................................................................................................................... 30 0 3 2.33 7 7
...........................................TCAGCCCAGCCGTGACTCTCCCCAGTGGT............................................................................................................................................... 29 0 3 2.33 7 7
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAT............ 27 1 1 2.00 2 2
....................................................................................................................................TGGACTTACTGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 2.00 4 4
......................................................................................................................................................................CGGGTCTTTCTAAGGGAACCAAAATGCCAGA.................. 31 0 1 2.00 2 2
...............TCCCCAGTCAGGATGTGCTGCGCCCCCTTCT......................................................................................................................................................................... 31 1 2 2.00 4 4
....................................................................................................................................TGGACTAACTGCCGCGCTTGGAGACGAGG...................................................... 29 1 2 2.00 4 4
....................................................................................................................................TGGACTCACTGCTGCGCTTGGAGACGAGGA..................................................... 30 1 2 2.00 4 4
....................................................................................................................................TGGACTCACTACCGCGCTTGGAGACGAGGA..................................................... 30 1 2 2.00 4 4
..........................................TTCAGCCCAGCCGTGACTCTCCCCAGTA................................................................................................................................................. 28 1 3 2.00 6 6
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAT........... 28 1 1 2.00 2 2
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAA............ 27 0 1 2.00 2 2
.........................................................................TCCCGAGACGCCGTCAGCATGAGCCTC................................................................................................................... 27 0 2 2.00 4 4
...............TCCCCAGTCAGGATGTGCTGCGCCCCCTT........................................................................................................................................................................... 29 0 2 2.00 4 4
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGACT.................................................................................................................................... 28 1 2 2.00 4 4
....................................................................................................................................GGGACTCACTGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 2.00 4 4
..............................................................................................................................................................................TCTAAGGGAACCAAAATGCCAGACAAAAAA........... 30 0 1 2.00 2 2
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAA........... 28 0 1 2.00 2 2
....................................................................................................................................TGGACTAACGGCCGCGCTTGGAGACGAGGA..................................................... 30 2 2 2.00 4 4
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGAAT.................................................................................................................................... 28 2 2 2.00 4 4
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGGTTT................................................... 33 3 2 2.00 4 4
.....................................................................................................................................................................ACGGGTCTTTCTAAGGGAACCAAAATGCC..................... 29 0 1 2.00 2 2
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGACAAAAAA........... 31 0 1 2.00 2 2
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGACAAAAT............ 30 1 1 2.00 2 2
..........................................TTCAGCCCAGCCGTGACTCTCCCC..................................................................................................................................................... 24 0 3 2.00 6 6
...................CAGTCAGGATGTGCTGCGCCCCCTTCAGCCC..................................................................................................................................................................... 31 0 2 2.00 4 4
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAAGAAA....... 32 0 1 2.00 2 2
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAGACGA........................................................ 30 0 2 2.00 4 4
....................................................................................................................................TGGACTGACAGCCGCGCTTGGAGACGAGGA..................................................... 30 2 2 2.00 4 4
....................................................................................................................................TGGACTCACTGCCGAGCTTGGAGACGAGGA..................................................... 30 1 2 2.00 4 4
......................TCAGGATGTGCTGCGCCCCCTTCAGCCCAG................................................................................................................................................................... 30 0 3 2.00 6 6
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACA......................................................... 27 1 2 2.00 4 4
...................................................................................................................................TTGGACTCAGTGCCGCGCTGGGAGACGAGG...................................................... 30 2 2 2.00 4 4
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGACAAAAAAA.......... 32 1 1 2.00 2 2
....................................................................................................................................................................AACGGGTCTTTCTAAGGGAACCAAAATGCC..................... 30 0 1 2.00 2 2
....................................................................................................................................TGGACTCACGGCCGCGCTTTGAGACGAGGA..................................................... 30 2 2 2.00 4 4
....................................................................................................................................TGGACTCACTGCCGCGCTTAGAGACGAGG...................................................... 29 1 2 2.00 4 4
....................................................................................................................................TGGACTAACAGCCGCGCTTAGAGACGAGGA..................................................... 30 3 2 2.00 4 4
..........................................................................................................................................................................TCTTTCTAAGGGAACCAAAATGCC..................... 24 0 1 2.00 2 2
..........................................TTCAGCCCAGCCGTGACTCTCCCCAGTGGTT.............................................................................................................................................. 31 1 3 1.67 5 5
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGGCGAGG...................................................... 30 1 3 1.67 5 5
...........................................TCAGCCCAGCCGTGACTCTCCCCAGTGGTC.............................................................................................................................................. 30 0 3 1.67 5 5
...................................................................................................................................TTGGACTCACTGCCGCACTTGGAGACGAGG...................................................... 30 1 3 1.67 5 5
..........................................TTCAGCCCAGCCGTGACTCTCCCCA.................................................................................................................................................... 25 0 3 1.67 5 5
.......................CAGGATGTGCTGCGCCCCCTTCAGCCCAGCT................................................................................................................................................................. 31 1 3 1.67 5 5
....................................................................................................................................TGGGCTCACTGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 1.50 3 3
.................CCCAGTCAGGATGTGCTGCGCCCC.............................................................................................................................................................................. 24 0 2 1.50 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTTGAAGACGAGG...................................................... 30 1 2 1.50 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGGC..................................................... 31 1 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGTGG...................................................... 29 1 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGCCGAGGA..................................................... 30 1 2 1.50 3 3
.........................................................................TCCCGAGACGCCGTCAGCATGAGCCT.................................................................................................................... 26 0 2 1.50 3 3
....................................................................................................................................TGGACTCACTGGCGCGCTTGGGGACGAGGA..................................................... 30 2 2 1.50 3 3
....................................................................................................................................TGGACTCACCGCCGCGCTTCGAGACGAGGA..................................................... 30 2 2 1.50 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAAACGAGG...................................................... 30 1 2 1.50 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCT................................................................. 19 0 2 1.50 3 3
....................................................................................................................................TGGACTGACAGCCGCGCTTAGAGACGAGGA..................................................... 30 3 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGTCGAGGA..................................................... 30 1 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGGT.................................................... 31 2 2 1.50 3 3
.....................................................................................................................................................TTGGAGACGAGGAGGAACGGGTCTTTCTA..................................... 29 0 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCCGAGGTTGGAGACGAGGA..................................................... 30 2 2 1.50 3 3
..............TTCCCCAGTCAGGATGTGCTGCGCCCCCTTC.......................................................................................................................................................................... 31 0 2 1.50 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGGG....................................................... 29 1 2 1.50 3 3
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGACGCCTA................................................................................................................................ 32 2 2 1.50 3 3
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAGATT......................................................... 29 2 2 1.50 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGGTC.................................................... 32 2 2 1.50 3 3
....................................................................................................................................TGGACTAACAGCCGCGCTTGGAGACGAGGA..................................................... 30 2 2 1.50 3 3
....................................................................TGGTCTCCCGAGACGCCGTAAGCATG......................................................................................................................... 26 1 2 1.50 3 3
....................................................................................................................................TGGACTCACAGCCGCGCTTGGAGACGAGGA..................................................... 30 1 2 1.50 3 3
...............TCCCCAGTCAGGATGTGCTGCGCCCCCT............................................................................................................................................................................ 28 0 2 1.50 3 3
................................................................CCAGTGGTCTCCCGAGACGCCGTCAGCATG......................................................................................................................... 30 0 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAAA...................................................... 29 2 2 1.50 3 3
...................................................................................................................................TTGGACTCAGTGCCGCGCTAGGAGACGAGG...................................................... 30 2 2 1.50 3 3
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGTA..................................................................................................................................... 27 2 2 1.50 3 3
.......................................................TGACTCTCCCCAGTGGTCTCCCGAG....................................................................................................................................... 25 0 2 1.50 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGTT..................................................... 31 2 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCCGCGCTTGGGGACGAGGT..................................................... 30 2 2 1.50 3 3
...........CGCTTCCCCAGTCAGGATGTGCTGCGCC................................................................................................................................................................................ 28 0 2 1.50 3 3
.................................................CAGCCGTGACTCTCCCCAGTGGTCTCCCGAGA...................................................................................................................................... 32 0 2 1.50 3 3
..................................................................AGTGGTCTCCCGAGACGCCGTCAGCATG......................................................................................................................... 28 0 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCGGCGCTTGGAGACGAGGT..................................................... 30 2 2 1.50 3 3
..........TCGCTTCCCCAGTCAGGATGTGCTGCGCCCC.............................................................................................................................................................................. 31 0 2 1.50 3 3
..............TTCCCCAGTCAGGATGTGCTGCGCCCCCTT........................................................................................................................................................................... 30 0 2 1.50 3 3
...............TCCCCAGTCAGGATGTGCTGCGCCCCCTTT.......................................................................................................................................................................... 30 1 2 1.50 3 3
....................................................................................................................................TGGACTCACTGTCGCGCTTGGAGACGAGGA..................................................... 30 1 2 1.50 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGAAA.................................................... 32 2 2 1.50 3 3
..............TTCCCCAGTCAGGATGTGCTGCGCCCCCTTT.......................................................................................................................................................................... 31 1 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCCGGGGTTGGAGACGAGGA..................................................... 30 2 2 1.50 3 3
.....................................................................................................................................................TTGGAGACGAGGAGGAACGGGTCTTTCT...................................... 28 0 2 1.50 3 3
....................................................................................................................................TGGACTCACTGCCGCGCT................................................................. 18 0 2 1.50 3 3
......................TCAGGATGTGCTGCGCCCCCTTCAGC....................................................................................................................................................................... 26 0 3 1.33 4 4
.......................CAGGATGTGCTGCGCCCCCTTCAGCC...................................................................................................................................................................... 26 0 3 1.33 4 4
..........................................TTCAGCCCAGCCGTGACTCTCCCCAGTGGA............................................................................................................................................... 30 1 3 1.33 4 4
..........................................TTCAGCCCAGCCGTGACTCTCCCCAGTGGTA.............................................................................................................................................. 31 1 3 1.33 4 4
..........................................TTCAGCCCAGCCGTGACTCTCCCCAGAA................................................................................................................................................. 28 2 3 1.33 4 4
.......................CAGGATGTGCTGCGCCCCCTTCAGCCCAGCC................................................................................................................................................................. 31 0 3 1.33 4 4
..........................................TTCAGCCCAGCCGTGACTCTCCCCAGA.................................................................................................................................................. 27 1 3 1.33 4 4
.......................................................TGACTCTCCCCAGTGGTCTCCGGAGACGCC.................................................................................................................................. 30 1 2 1.00 2 2
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGA............................................................. 25 0 2 1.00 2 2
....................................................................................................................................TGGACTCACTGCCGGGCTTGGAGACGAGG...................................................... 29 1 2 1.00 2 2
....................................................CCGTGACTCTCCCCAGTGGTCTCCCGAGAC..................................................................................................................................... 30 0 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGGAA.................................................... 32 1 2 1.00 2 2
........TCTCGCTTCCCCAGTCAGGATG......................................................................................................................................................................................... 22 0 2 1.00 2 2
......................TCAGGATGTGCTGCGCCCCCTTCAGCCCATT.................................................................................................................................................................. 31 2 3 1.00 3 3
............................................................................................................................................................................TTTCTAAGGGAACCAAAATGCCAGAC................. 26 0 1 1.00 1 1
....................................................................................................................................TGGACTCACGGCCGCGCTTAGAGACGAGG...................................................... 29 2 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCGCTGGGAGACGAGT...................................................... 30 2 2 1.00 2 2
.....................................................................................................................................................................ACGGGTCTTTCTAAGGGAACCAAAATGCCTT................... 31 2 1 1.00 1 1
.............................................................................................................................................................................TTCTAAGGGGACCAAAATGCCAGACAAA.............. 28 1 1 1.00 1 1
.............................................................................................................................................................................TTCTAAGGGAAACAAAATGCCAGACAAAT............. 29 2 1 1.00 1 1
....................................................................................................TCGGCAGCGGTGGCTGAGGGGCCGCAGC....................................................................................... 28 0 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGTCGCGCTTGGAGACGAG....................................................... 29 1 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCGCTGGGAGACG......................................................... 27 1 2 1.00 2 2
..........................................TTCAGCCCAGCCGTGACTCTCCCCT.................................................................................................................................................... 25 1 3 1.00 3 3
...................................................................................................................................TTGGACTCACTGCCGCGCTCGGAGACGAGT...................................................... 30 2 2 1.00 2 2
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGGGGA..................................................... 30 1 2 1.00 2 2
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAT.............. 25 1 1 1.00 1 1
......................TCAGGATGTGCTGCGCCCCCTTCAGCCT..................................................................................................................................................................... 28 1 3 1.00 3 3
.......................................................TGACTCTCCCCAGTGGTCTCCCGAGACGCCGA................................................................................................................................ 32 1 2 1.00 2 2
..............................................................................................................................................................................TCTAAGGGAACCAAAATGCCAGACAAAAAT........... 30 1 1 1.00 1 1
...................................................................................................................................TTGGACTCAATGCCGCGCTTGGAGACGAGG...................................................... 30 1 2 1.00 2 2
....................................................................................................................................TGGACTCACTGCCGCTCTTGGAGACGAGGA..................................................... 30 1 2 1.00 2 2
....................................................................................................................................TGGACTCACTGCCGTGCTTGGAGACGAGGA..................................................... 30 1 2 1.00 2 2
................................................................................................................................................................................TAAGGGAACCAAAATGCCAGACAAAAAAAGA........ 31 2 1 1.00 1 1
..............TTCCCCAGTCAGGATGTGCTGCGCCCCCTTA.......................................................................................................................................................................... 31 1 2 1.00 2 2
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGACAAAAATT.......... 32 2 1 1.00 1 1
.....................................................................................................................................TGTCTCACTGCCGCGCTTGGAGACGAGGA..................................................... 29 2 2 1.00 2 2
....................................................................................................................................................................AACGGGCCTGTCTAAGGGAACCAAAATGCC..................... 30 2 1 1.00 1 1
............................TGTGCTGCGCCCCCTTCAGCCCAGCCGTGACT........................................................................................................................................................... 32 0 3 1.00 3 3
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACT......................................................... 26 1 2 1.00 2 2
....................................................................................................................................TGGACTCACTGGCGCGCTTGGCGACGAGGA..................................................... 30 2 2 1.00 2 2
.................................................................................................................................TGTTGGACTCACTGCCGCGCT................................................................. 21 0 2 1.00 2 2
......................................................................................................................................................TGGAGACGAGGAGAAACGGGTCTTTCTAAGT.................................. 31 2 2 1.00 2 2
...................................................................................................................................TTGGACTCACTACCGCGCTTGGAGACGAGG...................................................... 30 1 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCTCTTGGAGACGAGG...................................................... 30 1 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCGCTTGTAGACGAGGA..................................................... 31 1 2 1.00 2 2
....................................................CCGTGACTCTCCCCAGTGGTCTCCCGAG....................................................................................................................................... 28 0 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGAGGAG.................................................... 32 0 2 1.00 2 2
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCCGAC................. 25 1 1 1.00 1 1
...........................................TCAGCCCAGCCGTGACTCTCCCCAGT.................................................................................................................................................. 26 0 3 1.00 3 3
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGA........................................................... 24 0 2 1.00 2 2
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGAT..................................................... 30 2 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCGCTTGG.............................................................. 22 0 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCGCTTGGAGACGTA....................................................... 29 2 2 1.00 2 2
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAGACA......................................................... 29 1 2 1.00 2 2
..........................................................................................................................................................................TCTTTCTAAGGGAACCAAATTGCCAGACT................ 29 2 1 1.00 1 1
...................................................................................................................................TTGGACTCACTGCCGCGCTGGGAGACGAGGT..................................................... 31 2 2 1.00 2 2
.............................................................................................................................................................................TTCTAAGGGAACCAAAATGCCAGACAAA.............. 28 0 1 1.00 1 1
.................................................................................................................................TGTTGGACTCACTGCCGCGCTTGGAGACGTT....................................................... 31 2 2 1.00 2 2
...................................................................................................................................TTGGACACAATGCCGCGCTGGGAGACGAGG...................................................... 30 3 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCGCTGGGAGACGAGA...................................................... 30 2 2 1.00 2 2
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGATT.................................................... 31 3 2 1.00 2 2
....................................................................................................................................TGGACTCACTGCCGCGCTTGGGGACGAGGAT.................................................... 31 2 2 1.00 2 2
...................................................................................................................................TTGGACTCACTGCCGCGCTGGGAGACGAGGA..................................................... 31 1 2 1.00 2 2
....................................................................................................................................TGGACTAACGGCCGCGCTTCGAGACGAGGA..................................................... 30 3 2 1.00 2 2
.....................................................CGTGACTCTCCCCAGTGGTCTCCCGAGACT.................................................................................................................................... 30 1 2 1.00 2 2
..........................................................................................................................................................................TCTTTCTAAGGGAACCAAAATGCCAGA.................. 27 0 1 1.00 1 1
....................................................................................................................................TGGACTCACTGCCGCGCTTGGAGACGAGGATTT.................................................. 33 3 2 1.00 2 2

Anti-sense strand reads

AAGGGCCGAGAGCGAAGGGGTCAGTCCTACACGACGCGGGGGAAGTCGGGTCGGCACTGAGAGGGGTCACCAGAGGGCTCTGCGGCAGTCGTACTCGGAGAGCCGTCGCCACCGACTCCCCGGCGTCGCACAACCTGAGTGACGGCGCGAACCTCTGCTCCTCCTTGCCCAGAAAGATTCCCTTGGTTTTACGGTCTGTTTTTTCTTTTTATGGC

**************************************...((((((((((....((((((.(((.((.((.(((..((((..((.(((((((.((((((....)))))).)).)))))))))))))).)))))))))))))..)).)))..))))).....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.AGGGCCGAGAGCGAAGGGGTCAGTCCTACAC....................................................................................................................................................................................... 31 0 2 14.50 29 29
.AGGGCCGAGAGCGAAGGGGTCAGTCCTACACG...................................................................................................................................................................................... 32 0 2 13.00 26 26
..............................................................................................................................................CGGCGCGAACCTCTGCTCC...................................................... 19 0 2 5.00 10 10
.AGGGCCGAGAGCGAAGGGGTCAGTCCTACA........................................................................................................................................................................................ 30 0 2 2.50 5 5
..GGGCCGAGAGCGAAGGGGTCAGTCCTACACG...................................................................................................................................................................................... 31 0 2 2.50 5 5
.......................................................................................................................................................................................TGGTTTTACGGTCTGTTTT............. 19 0 1 1.00 1 1
.......................................................................................................................................................................................TGGTTTTACGGTCTGTTT.............. 18 0 1 1.00 1 1
..GGGCCGAGAGCGAAGGGGTCAGTCCTACAC....................................................................................................................................................................................... 30 0 2 1.00 2 2
.......................................................................................................................................................................................TGGTTTTACGGTCTGTT............... 17 0 1 1.00 1 1
.......................................................................................................................................................................................TGGTTTTACGGTCTGTTTTTTCTTTTTATGGC 32 0 1 1.00 1 1
.AGGGCCGAGAGCGAGGGGGTCAGTCCTACAC....................................................................................................................................................................................... 31 1 2 0.50 1 1
.AGGGCCGAAAGCGAAGGGGTCAGTCCTACACG...................................................................................................................................................................................... 32 1 2 0.50 1 1
..............................................................................................................................................CGGCGCGAACCTCTGC......................................................... 16 0 2 0.50 1 1
.AGGGCCGAGAGCGAAGGGGTCAGTCCTACACGACG................................................................................................................................................................................... 35 0 2 0.50 1 1
..............................................................................................................................................CGGCGCGAACCTCTGCTC....................................................... 18 0 2 0.50 1 1
TTGGGCCGAGAGCGAAGGGGTCAGTCCTACAC....................................................................................................................................................................................... 32 2 2 0.50 1 1
...............................................................................................................................................................CCTCCTTGCCCAGAAAGAT..................................... 19 0 2 0.50 1 1
.AGGGCCGAGAGCGAAGGGGTCAGTCCTACACGA..................................................................................................................................................................................... 33 0 2 0.50 1 1
................................................................................................................................................GCGCGAACCTCTGCTCC...................................................... 17 0 2 0.50 1 1
AAGGGCCGAGAGCGAAGGGGTCAGTCCTACAC....................................................................................................................................................................................... 32 0 2 0.50 1 1
...................................................................................................................................................CGAACCTCTGCTCCTCCTT................................................. 19 0 2 0.50 1 1
.AGGGCCGAGAGCGAAGGGGTCAGTTCTACAC....................................................................................................................................................................................... 31 1 2 0.50 1 1
..GGGCCGAGAGCGAAGGGGTCAGTCCTACA........................................................................................................................................................................................ 29 0 2 0.50 1 1
................................GACGCGGGGGAAGTCGGGT.................................................................................................................................................................... 19 0 3 0.33 1 1
................................GACGCGGGGGAAGTCGGGTCGGCACTGAGAGGG...................................................................................................................................................... 33 0 3 0.33 1 1
................................TACGCGGGGGAAGTCGGGTCGGCACTGAGAGGG...................................................................................................................................................... 33 1 3 0.33 1 1
...........................................................................................................................................................................................TTTACGGTCTGTTTTT............ 16 0 11 0.09 1 1

Generated: 09/01/2015 at 11:32 AM