ID:

eca-mir-9051

 Coordinate:

chr1:108539637-108539741 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.1 -32.4 -32.1

Sense Strand Reads

TGCTGGCTTCCGTGTGACTGAGGAACCAACCCATAGGACTCCTAGAAATCATAGTGAAAACTCAAACCTTTATTTTGTAGCAGACTTCAGTTCTCGCAGGCTAAGGGGGCAGAGGTCTTAAAGCAAAGGTTACCTGAGTGAAGGGAGAGTTCCCCTCCAATAAAGCCTAAAAGTATCCCTGGACTCAACCATCAGGAGGCTGGTG

*****************************************************.....(((((...(((((((((.((((((((((((.((((((.........)))))).)))))))..........)))))..)))))))))..)))))..............**************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACTCAACC............... 30 0 1 11.00 11 11
.................................TAGGACTCCTAGAAATCATAGTGAAAACT............................................................................................................................................... 29 0 1 8.00 8 8
..........................................TAGAAATCATAGTGAAAACTCAAACCT........................................................................................................................................ 27 0 1 8.00 8 8
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACTCAACT............... 30 1 1 6.00 6 6
.................................TAGGACTCCTAGAAATCATAGTGAAAACTA.............................................................................................................................................. 30 1 1 6.00 6 6
..............TGACTGAGGAACCAACCCATAGGACTCCTAGT............................................................................................................................................................... 32 1 1 4.00 4 4
........................ACCAACCCATAGGACTCCTAGAAATCATAGT...................................................................................................................................................... 31 0 1 4.00 4 4
............TGTGACTGAGGAACCAACCCATAGGAC...................................................................................................................................................................... 27 0 1 3.00 3 3
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACTCAAC................ 29 0 1 3.00 3 3
..............TGACTGAGGAACCAACCCATAGGACT..................................................................................................................................................................... 26 0 1 3.00 3 3
.................................TAGGACTCCTAGAAATCATAGTGAAAACTT.............................................................................................................................................. 30 1 1 3.00 3 3
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACT.................... 25 0 1 3.00 3 3
......CTTCCGTGTGACTGAGGAACCAACCCATAGT........................................................................................................................................................................ 31 1 1 3.00 3 3
.................................TAGGACTCCTAGAAATCATAGTGAAAACTCATT........................................................................................................................................... 33 2 1 3.00 3 3
.......TTCCGTGTGACTGAGGAACCAACCCATAGGT....................................................................................................................................................................... 31 1 1 3.00 3 3
..............TGACTGAGGAACCAACCCATAGGA....................................................................................................................................................................... 24 0 1 2.00 2 2
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACTCAACCTT............. 32 1 1 2.00 2 2
............TGTGACTGAGGAACCAACCCATAGGACTCCTTT................................................................................................................................................................ 33 2 1 2.00 2 2
.............GTGACTGAGGAACCAACCCATAGGACT..................................................................................................................................................................... 27 0 1 2.00 2 2
..............TGACTGAGGAACCAACCCATAGGAT...................................................................................................................................................................... 25 1 1 2.00 2 2
.................................TAGGACTCCTAGAAATCATAGTGAAAACTCT............................................................................................................................................. 31 1 1 2.00 2 2
.....................................................................TTATTTTGTAGCAGACTTCAGTTCTCACAGT......................................................................................................... 31 2 1 2.00 2 2
.................................TAGGACTCCTAGAAATCATAGTGAAAACTC.............................................................................................................................................. 30 0 1 2.00 2 2
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACTCAACCT.............. 31 1 1 2.00 2 2
............................ACCCATAGGACTCCTAGAAATCATAGTGAAA.................................................................................................................................................. 31 0 1 2.00 2 2
..............TGACTGAGGAACCAACCCATAGGAC...................................................................................................................................................................... 25 0 1 2.00 2 2
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACTCATT................ 29 2 1 1.00 1 1
.......................AACCAACCCATAGGACTCCGAGAAATCATAGT...................................................................................................................................................... 32 1 1 1.00 1 1
........................................................................TTTTGTAGCAGACTTCAGTTCTCACAGGCT....................................................................................................... 30 1 1 1.00 1 1
..........................................TAGAAATCATAGTGAAAACTCAAACC......................................................................................................................................... 26 0 1 1.00 1 1
.............GTGACTGAGGAACCAACCCATAGGACTCCT.................................................................................................................................................................. 30 0 1 1.00 1 1
.......TTCCGTGTGACTGAGGAACCAACCCATAGTTT...................................................................................................................................................................... 32 3 1 1.00 1 1
............TGTGACTGAGGAACCAACCCATAGGACTC.................................................................................................................................................................... 29 0 1 1.00 1 1
.....................................................................................................................TTAAAGCAAAGGGTACCTGAGTGAAGGGA........................................................... 29 1 1 1.00 1 1
............................ACCCATAGGACTCCTAGAAATCATAGTGAAT.................................................................................................................................................. 31 1 1 1.00 1 1
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACTCAACCATC............ 33 0 1 1.00 1 1
..............TGACTGAGGAACCAACCCATAGGACTTT................................................................................................................................................................... 28 2 1 1.00 1 1
.................................TAGGACTCCTAGAAATCATAGTGAAAACTCA............................................................................................................................................. 31 0 1 1.00 1 1
.......................................................................................................................................................................TAAAAGTATCCCTGGACTCAACCATC............ 26 0 1 1.00 1 1
..............TGACTGAGGGACCAACCCAAAGGAC...................................................................................................................................................................... 25 2 1 1.00 1 1
...........................AACCCATAGGACTCCTAGAAATCATA........................................................................................................................................................ 26 0 1 1.00 1 1
.............................................................................TAGCAGACTTCAGTTCTCACAGGCTAAGGGT................................................................................................. 31 2 1 1.00 1 1
.........................................CTAGAAATCATAGTGAAAACTCAAA........................................................................................................................................... 25 0 1 1.00 1 1
..............TGACTGAGGAACCAACCCATAGGACTCCTA................................................................................................................................................................. 30 0 1 1.00 1 1
.....................GGAACCAACCCATAGGACTCCTAGAAATCATACT...................................................................................................................................................... 34 1 1 1.00 1 1
......CTTCCGTGTGACTGAGGAACCAACCCATA.......................................................................................................................................................................... 29 0 1 1.00 1 1
.................................TAGGACTCCTAGGAATCATAGTGAAAACTCT............................................................................................................................................. 31 2 1 1.00 1 1
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACTCAACCTA............. 32 2 1 1.00 1 1
.......TTCCGTGTGACTGAGGAACCAACCCATT.......................................................................................................................................................................... 28 1 1 1.00 1 1
..............TGACTGAGGAACCAACCCATAGGACTCCTATT............................................................................................................................................................... 32 2 1 1.00 1 1
..........................................TAGAAATCATAGTGAAAACTCAAACCTT....................................................................................................................................... 28 0 1 1.00 1 1
...........................................................................................................................................................TCCAATAAAGCCTAAAAGTATCCCTGGACT.................... 30 0 1 1.00 1 1
....................................................................TTTATTTTGTAGCAGACTTCAGTTC................................................................................................................ 25 0 1 1.00 1 1
..........................................TAGAAATCATAGTGAAAACTCAAACCTTTA..................................................................................................................................... 30 0 1 1.00 1 1
........................................................................TTTTGTAGCAGACTTCAGTTCTCACA........................................................................................................... 26 1 1 1.00 1 1
.........CCGTGTGACTGAGGAACCAACCCATAGGACTCCTTT................................................................................................................................................................ 36 2 1 1.00 1 1
..............TGACTGAGGAACCAACCCATAGGTC...................................................................................................................................................................... 25 1 1 1.00 1 1
..........................................TAGAAATCAGAGTGAAAACCCAAACC......................................................................................................................................... 26 2 1 1.00 1 1
........TCCGTGTGACTGAGGAACCAACCCATAGGATT..................................................................................................................................................................... 32 1 1 1.00 1 1
.................................TAGGACTCCTAGAAATCATGGTGAAAACT............................................................................................................................................... 29 1 1 1.00 1 1
......CTTCCGTGTGACTGAGGAACCAACCCATAGTTT...................................................................................................................................................................... 33 3 1 1.00 1 1
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGACTCTTT................ 29 3 1 1.00 1 1
................................................................................................................................................................TAAAGCCTAAAAGTATCCCTGGAC..................... 24 0 1 1.00 1 1
........TCCGTGTGACTGAGGAACCAACCCATT.......................................................................................................................................................................... 27 1 1 1.00 1 1
......................................................................TATTTTGTAGCAGACTTCAGTTCTCACAGGC........................................................................................................ 31 1 1 1.00 1 1
..............TGACTGAGGAACCAACCCATAGGACTC.................................................................................................................................................................... 27 0 1 1.00 1 1
.........................................................................................................................AGCAAAGGTTACCTGAGTGAAGGGAGAGT....................................................... 29 0 1 1.00 1 1
................................................................AACCTTTATTTTGTAGCAGACTTCAG................................................................................................................... 26 0 1 1.00 1 1
...........................AACCCATAGGACTCCTAGAAATCATAGTGAAT.................................................................................................................................................. 32 1 1 1.00 1 1
............................CCCCATAGGACTCCTAGAAATCATAG....................................................................................................................................................... 26 1 1 1.00 1 1
.................................TAGGACTCCTAGAAATCATAGTGAAAACTCAAA........................................................................................................................................... 33 0 1 1.00 1 1

Anti-sense strand reads

ACGACCGAAGGCACACTGACTCCTTGGTTGGGTATCCTGAGGATCTTTAGTATCACTTTTGAGTTTGGAAATAAAACATCGTCTGAAGTCAAGAGCGTCCGATTCCCCCGTCTCCAGAATTTCGTTTCCAATGGACTCACTTCCCTCTCAAGGGGAGGTTATTTCGGATTTTCATAGGGACCTGAGTTGGTAGTCCTCCGACCAC

****************************************.....(((((...(((((((((.((((((((((((.((((((.........)))))).)))))))..........)))))..)))))))))..)))))..............***************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:32 AM