ID:

eca-mir-9050

 Coordinate:

chr1:99502868-99503012 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.7 -36.3

Sense Strand Reads

GTGGCCTTCAGGTGAGAGAGGGACCCATTCAAAGGGAAGGTGGGAAGAGGGAGGGTCGGTTTCATCTAGGAGGGGAAGGTCAGAAGGAGAAGCGACTGGCTTTGGATATGCTTCCATGGGGTTCAGGTTTTCCATGGCCAGTTGGGGCTCTTTCCCTGCTGAGCCTGGGCCTCATGTTCAAAGGTGCTTCTGAGGCGGTCCATGGACGGTACCTTCTCCAGCAAAGTGAGCCTATGACTTTTGAA

********************************************************************((...((.(((...(((((((...(((((((((.((((...((((((....))...))))..)))).)))))))))...)))))))))).))...))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
..........................................................................................................................................................................................................TGGACGGTACCTTCTCCAGCAAAGTGAGCCT............ 31 0 1 32.00 32 32
..........................................................................................................................................................................................................TGGACGGTACCTTCTCCAGCAAAGTGAGCC............. 30 0 1 8.00 8 8
..........................................................................................................................................................................................................TGGACGGTACCTTCTCCAGCAAAGTGAGCCTT........... 32 1 1 5.00 5 5
......................................................................................................................................TGGCCTGTTGGGGCTCTTTCCCTGCTGAGC................................................................................. 30 1 1 5.00 5 5
.........................................................................................................................TTCAGGTTTTCCATGGCCAGTTGGGGCTC............................................................................................... 29 0 1 4.00 4 4
...................................................................................AAGGAGAAGCGACTGGCTTTGGATATGCTT.................................................................................................................................... 30 0 1 3.00 3 3
....................................................................................................................................................TCTTTCCCTGCTGAGCCTGGGCCTCATGTT................................................................... 30 0 1 2.00 2 2
..........................................................................................................................TCAGGTTTTCCATGGCCAGTTGGGGCTCT.............................................................................................. 29 0 1 2.00 2 2
................................................................................................................................TTTCCATGGCCAGTTGGGGCTCTTTCCCTGC...................................................................................... 31 0 1 2.00 2 2
.......................................................................................................................GGTTCAGGTTTTCCATGGCCAGTTGGGGCTC............................................................................................... 31 0 1 2.00 2 2
...........................................................................................................................CAGGTTTTCCATGGCCAGTTGGGGCTC............................................................................................... 27 0 1 2.00 2 2
..................................................................................................................................TCCATGGCCTGTTGGGGCTCTTTCCCTGC...................................................................................... 29 1 1 2.00 2 2
.................................................................................................................................TTCCATGGCCAGTTGGGGCTCTTTCCCTGC...................................................................................... 30 0 1 2.00 2 2
......................................................................................................................................................................................................................TCTCCAGCAAAGTGAGCCTATGACTTTTGA. 30 0 1 2.00 2 2
..............................................................................................................................................................................TGTTCAAAGGTGCTTCTGAGGCGGTCCATT......................................... 30 1 1 2.00 2 2
............................TCAAAGGGAAGGCGGGAAGAGGGGGGGTCT........................................................................................................................................................................................... 30 3 1 1.00 1 1
..........................................................................................AGCGACTGGCTTTGGAGATGCTTCCATGGGT............................................................................................................................ 31 2 1 1.00 1 1
.....................................................................................................TTGGATATGCTTCCATGGGGTTCAGGTTT................................................................................................................... 29 0 1 1.00 1 1
.........................................................................................................................TTCAGGTTTTCCATGGCCAGTTGGGGCTCT.............................................................................................. 30 0 1 1.00 1 1
..........................................................................................AGCGACTGGCTTTGGAGATGCTTCCATGGT............................................................................................................................. 30 2 1 1.00 1 1
.........................................................................................................................................................................................................ATGGACAGTACCTTCTCCAGCAAAGTGAGA.............. 30 2 1 1.00 1 1
.....................................................................................................................................................................TGGGCCTCATGTTCAAAGGTGCTTCTGAGG.................................................. 30 0 1 1.00 1 1
............................................................................................................................................................................................................GACGGTACCTTCTCCAGCAAAGTGAGCCT............ 29 0 1 1.00 1 1
.......................................................................................................................................................TTCCCTGCTGAGCCTGGGCCTCATGTT................................................................... 27 0 1 1.00 1 1
..................................................................TAGGAGGGGAAGGTCAGAAGGAGAAGCGACT.................................................................................................................................................... 31 0 1 1.00 1 1
......................................................................................................................................TGGCCTGTTGGGGCTCTTTCCCTGC...................................................................................... 25 1 1 1.00 1 1
.........................................................................................................................TTCAGGTTTTCCATGGCCAGTTGGGGCTCTT............................................................................................. 31 0 1 1.00 1 1
........................................................................................................................GTTCAGGTTTTCCATGGCCAGTTGGGGCTC............................................................................................... 30 0 1 1.00 1 1
...................................................................CGGAGGGGAAGGTCAGAAGGAGAAGCGACT.................................................................................................................................................... 30 1 1 1.00 1 1
.........................................................................................................................TTCAGGTTTTCCATGGCCTGTTGGGGCTCTT............................................................................................. 31 1 1 1.00 1 1
..........................................................................................AGCGACTGGCTTTGAAGATGCTTCCATGGT............................................................................................................................. 30 3 1 1.00 1 1
..............................................................................................................................................................................TGTTCAAAGGTGCTTCTGAGGCGGTCCATG......................................... 30 0 1 1.00 1 1
......................................................................................................................................................................................................TCCATGGACGGTACCTTCTCCAGCAAAGTGAAT.............. 33 2 1 1.00 1 1
.........................................................................................................................TTCAGGTTTTCCATGGCCTGTTGGGGCTCT.............................................................................................. 30 1 1 1.00 1 1
.........................................................................................................................TTCAGGTTTTCCATGGCCAGTTGGGGCTCTTTCT.......................................................................................... 34 1 1 1.00 1 1
..................................................................................GAAGGAGAAGCGACTGGCTTTGGATATGCTTT................................................................................................................................... 32 1 1 1.00 1 1
.........................................................................................................................TTCAGGTTTTCCATGGCCAGTTGGGGCTCTAA............................................................................................ 32 2 1 1.00 1 1
..........................................................................................AGCGACTGGCTTTGGATATGCTTCCAT................................................................................................................................ 27 0 1 1.00 1 1
..........................................................................................................................................................................................................TGGACGGTACCTTCTCCAGCAAAGTGAGCCTTTAT........ 35 3 1 1.00 1 1
.......................................................................................................................GGTTCAGGTTTTCCATGGCCTGTTGGGGCTCT.............................................................................................. 32 1 1 1.00 1 1
..........................................................................................................................................................................................................TGGACGGTACCTTCTCCAGCAAAGTGAGCCTA........... 32 0 1 1.00 1 1
..............................................................................................................................................TGGGGCTCTTTCCCTGCTGAGCCTGGGCCT......................................................................... 30 0 1 1.00 1 1
..............................................................................................................................................................................TGTTCAAAGGTGCTTCTGAGGCGGTCC............................................ 27 0 1 1.00 1 1
.......................................................................................................................................................TTCCCTGCTGAGCCTGGGCCTCATGTTCAAAG.............................................................. 32 0 1 1.00 1 1
..................................................................TAGGAGGGGAAGGTCAGAAGGAGAAGCGATT.................................................................................................................................................... 31 1 1 1.00 1 1
..........................................................................................................................................................................................................TGGACGGTACCTTCGCGAGCAAAGTGAGCCT............ 31 2 1 1.00 1 1
.......TCAGGTGAGAGAGGGACCCATTCAAAGG.................................................................................................................................................................................................................. 28 0 1 1.00 1 1
............TGAGAGAGGGACCCATTCAAAGGGAAGGTGG.......................................................................................................................................................................................................... 31 0 1 1.00 1 1
...........................................................TTTCATCTAGGAGGGGAAGGTCAGAAGGAGT........................................................................................................................................................... 31 1 1 1.00 1 1
...............................................................................TCAGAAGGAGAAGCGACTGGCTTTGGAGA......................................................................................................................................... 29 1 1 1.00 1 1
..........................................................................................................................................................................................................TGGACGGTAACTTCTCCAGAAAAGTGAGCCT............ 31 2 1 1.00 1 1
....................................................................................................TTTGGAGATGCTTCCATGGGGTTCAGGTT.................................................................................................................... 29 1 1 1.00 1 1
...................................................................................AAGGAGAAGCGACTGGCTTTGGATATGC...................................................................................................................................... 28 0 1 1.00 1 1
.......................................................................................................................................................................................................CCATGGACGGTACCTTCTCCAGCAAAGTGA................ 30 0 1 1.00 1 1
...............................................................................................................................................................TGAGCCTGGGCCTCATGTTCAAAGGTG........................................................... 27 0 1 1.00 1 1
................................................................................................................................................................................TTCAAAGGTGCTTCTGAGGCGGTCCATG......................................... 28 0 1 1.00 1 1
........CAGGTGAGAGAGGGACCCATTCAAAGGGAA............................................................................................................................................................................................................... 30 0 1 1.00 1 1
.........................................................................................................................TTCAGGTTTTCAATGGCCAGTTGGGGCTCTAA............................................................................................ 32 3 1 1.00 1 1
............................TCAAAGGGAAGGTGGGAAGAGGGAGGGTCT........................................................................................................................................................................................... 30 1 1 1.00 1 1
......TTCAGGTGAGAGAGGGACCCATTCAAAGGAA................................................................................................................................................................................................................ 31 1 1 1.00 1 1
..........................................................................................................TATGCTTCCATGGGGTTCAGGTTTTCCATG............................................................................................................. 30 0 1 1.00 1 1
............................................................................................................................................................TGCTGAGCCTGGGCCTCATGTTCAAAGGTTTT......................................................... 32 2 1 1.00 1 1
.........................................................................................................................TTCAGGTTTTCAATGGCCAGTTGGGGCTC............................................................................................... 29 1 1 1.00 1 1
.......................................................................................................................................................TTCCCTGCTGAGCCTGGGCCTCATGTTC.................................................................. 28 0 1 1.00 1 1
............................................................................................................................................................................................TCTGAGGCGGTCCATGGACGGTACCTTC............................. 28 0 1 1.00 1 1
................................................................................................................................TTTCCATGGCCTGTTGGGGCTCTTTCCCTGCT..................................................................................... 32 1 1 1.00 1 1
............................................................TTCATCTAGGAGGGGAAGGTCAGAAGGAG............................................................................................................................................................ 29 0 1 1.00 1 1
................................................................................................................................TTTCCATGGCCTGTTGGGGCTCTTTCCCTGC...................................................................................... 31 1 1 1.00 1 1
............................................................................................................................................................................CATGTTCAAAGGTGCTTCTGAGGCGGTCT............................................ 29 1 1 1.00 1 1
..............................................................................................................................................................................TGTTCAAAGGTGCTTCTGAGGCGGT.............................................. 25 0 1 1.00 1 1
..........................................................................................................................................................................................................TGGACGGTACCTACTCCAGCAAAGTGAGCC............. 30 1 1 1.00 1 1
..........................................................................................................................................................................................................TGGACGGTACCTTCTCCAGCAAACTGAGCCT............ 31 1 1 1.00 1 1
..................................................................TAGGAGGGGAAGGTCAGAAGGAGA........................................................................................................................................................... 24 0 1 1.00 1 1
.......................................................................................................................GGTTCAGGTTTTCCATGGCCTGTTGGGGCTC............................................................................................... 31 1 1 1.00 1 1
..............................................................................................................................................................................TGTTCAAAGGTGCTTCTGAGGCGG............................................... 24 0 1 1.00 1 1
................................................................................................TGGCTTTGGAGATGCTTCCATGGGGTTCATT...................................................................................................................... 31 3 1 1.00 1 1
.............................................................................................................................................................................................CTGAGGCGGTCCATGGACGGTACCTTC............................. 27 0 1 1.00 1 1
......................................................................................GAGAAGCGACTGGCTTTGGATATGCTTCCATG............................................................................................................................... 32 0 1 1.00 1 1
......................................................................................................................................................................................................................TCTCCAGCAAAGTGAGCCTATGACTTTTG.. 29 0 1 1.00 1 1
...........................................................TTTCATCTAGGAAGGGAAGGTCAGAAGGAGT........................................................................................................................................................... 31 2 1 1.00 1 1
.....................................................................................................TTGGATATGCTTCCATGGGGTTCAGGTTTT.................................................................................................................. 30 0 1 1.00 1 1
.................................................................................................................................TTCCATGGCCTGTTGGGGCTCTTTCCCTGA...................................................................................... 30 2 1 1.00 1 1
............................................................................................................................................................................................TCTGAGGCGGTCCATGGACGGTACCTTCT............................ 29 0 1 1.00 1 1
..........................................................................................AGCGACTGGCTTTGGATATGCTTCCATGGTT............................................................................................................................ 31 2 1 1.00 1 1
...........................................................................................................................................................................TCATGTTCAAAGGTGCTTCTGAGGCGGTC............................................. 29 0 1 1.00 1 1

Anti-sense strand reads

CACCGGAAGTCCACTCTCTCCCTGGGTAAGTTTCCCTTCCACCCTTCTCCCTCCCAGCCAAAGTAGATCCTCCCCTTCCAGTCTTCCTCTTCGCTGACCGAAACCTATACGAAGGTACCCCAAGTCCAAAAGGTACCGGTCAACCCCGAGAAAGGGACGACTCGGACCCGGAGTACAAGTTTCCACGAAGACTCCGCCAGGTACCTGCCATGGAAGAGGTCGTTTCACTCGGATACTGAAAACTT

********************************************************************************((...((.(((...(((((((...(((((((((.((((...((((((....))...))))..)))).)))))))))...)))))))))).))...))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 11:32 AM