ID:

eca-mir-9049

 Coordinate:

chr1:60795287-60795411 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.9 -45.8 -45.8
mature

  1. eca-mir-9049  chr1:60795318-60795340 +
  2. chr8:4067586-4067608 +
  3. chr22:7707293-7707315 -
  4. chr24:25578610-25578632 -
star

Sense Strand Reads

GTGACATCAGCCAAGAGACTAGAGTGAGCCCTCAAATTTATCTATCACCCCAAGAGATGGGAGGTCAGGAGTTTTAAAGGTTGCAAGGAATGCAGCTGCTTGTAGGGAGGGGGAGCCTGTGGCCTTGCTAAGTGGAGTTTTCCTAGCAGCCTGTATTTGGGCTGGTGAGTTTGCTTGTAGACGGGACGATGGTAAGATAAGGGAATCTGCAGGTAGATATCCTTG

***********************************........(((..(((.......(((((.(((..(((((...(((((((.(((((.((..((((((((((((..(((...)))....)))))).)))))).)).))))).)))))))......)))))..))).))).)).......)))..)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
.................................................................................TGCAAGGAATGCAGCTGCTTGTA......................................................................................................................... 23 0 4 1.25 5 5
.........................................................................TTAAAGGTTGCAAGGAATGCAGCTGCTTGTA......................................................................................................................... 31 0 4 0.25 1 1
.........................................................................TTAAAGGTTGCAAGGAATGCAGCTGCTTGT.......................................................................................................................... 30 0 5 0.20 1 1
.................................................................................TGCAAGGAATGCAGCTGCTGG........................................................................................................................... 21 1 7 0.14 1 1
.........................................................................TTAAAGGTTGCAAGGAAT...................................................................................................................................... 18 0 20 0.05 1 1

Anti-sense strand reads

CACTGTAGTCGGTTCTCTGATCTCACTCGGGAGTTTAAATAGATAGTGGGGTTCTCTACCCTCCAGTCCTCAAAATTTCCAACGTTCCTTACGTCGACGAACATCCCTCCCCCTCGGACACCGGAACGATTCACCTCAAAAGGATCGTCGGACATAAACCCGACCACTCAAACGAACATCTGCCCTGCTACCATTCTATTCCCTTAGACGTCCATCTATAGGAAC

***********************************........(((..(((.......(((((.(((..(((((...(((((((.(((((.((..((((((((((((..(((...)))....)))))).)))))).)).))))).)))))))......)))))..))).))).)).......)))..)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR871532

testes
................CTGATCTCACTCGGGAGTTTAAATA........................................................................................................................................................................................ 25 0 2 0.50 1 1
...TGATGTCGGTCCTCTGATCTCACTCGGGAGTTT............................................................................................................................................................................................. 33 3 17 0.06 1 1

Generated: 09/01/2015 at 11:31 AM